Strain Fitness in Sinorhizobium meliloti 1021 around SMc01708

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01709 and SMc01708 are separated by 662 nucleotidesSMc01708 and SMc01707 are separated by 8 nucleotidesSMc01707 and SMc01706 are separated by 109 nucleotides SMc01710: SMc01710 - hypothetical protein, at 496,646 to 501,478 SMc01710 SMc01709: SMc01709 - signal peptide protein, at 501,270 to 501,773 SMc01709 SMc01708: SMc01708 - hypothetical protein, at 502,436 to 506,311 SMc01708 SMc01707: SMc01707 - signal peptide protein, at 506,320 to 506,889 SMc01707 SMc01706: SMc01706 - signal peptide protein, at 506,999 to 507,574 SMc01706 Position (kb) 502 503 504 505 506 507Strain fitness (log2 ratio) -2 -1 0 1 2at 501.536 kb on + strand, within SMc01709at 501.537 kb on - strand, within SMc01709at 501.627 kb on + strand, within SMc01709at 501.628 kb on - strand, within SMc01709at 501.743 kb on + strandat 501.743 kb on + strandat 501.771 kb on + strandat 501.772 kb on - strandat 501.838 kb on + strandat 501.838 kb on + strandat 501.839 kb on - strandat 501.839 kb on - strandat 501.839 kb on - strandat 501.848 kb on + strandat 501.849 kb on - strandat 501.849 kb on - strandat 502.214 kb on - strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.260 kb on - strandat 502.260 kb on - strandat 502.324 kb on + strandat 502.325 kb on - strandat 502.353 kb on + strandat 502.353 kb on + strandat 502.401 kb on + strandat 502.495 kb on + strandat 502.496 kb on - strandat 502.496 kb on - strandat 502.496 kb on - strandat 502.542 kb on - strandat 502.658 kb on - strandat 502.900 kb on - strand, within SMc01708at 503.022 kb on + strand, within SMc01708at 503.023 kb on - strand, within SMc01708at 503.027 kb on - strand, within SMc01708at 503.075 kb on - strand, within SMc01708at 503.185 kb on + strand, within SMc01708at 503.186 kb on - strand, within SMc01708at 503.186 kb on - strand, within SMc01708at 503.338 kb on + strand, within SMc01708at 503.338 kb on + strand, within SMc01708at 503.452 kb on + strand, within SMc01708at 503.452 kb on + strand, within SMc01708at 503.496 kb on + strand, within SMc01708at 503.497 kb on - strand, within SMc01708at 503.513 kb on - strand, within SMc01708at 503.573 kb on - strand, within SMc01708at 503.573 kb on - strand, within SMc01708at 504.088 kb on + strand, within SMc01708at 504.089 kb on - strand, within SMc01708at 504.200 kb on + strand, within SMc01708at 504.201 kb on - strand, within SMc01708at 504.201 kb on - strand, within SMc01708at 504.201 kb on - strand, within SMc01708at 504.482 kb on - strand, within SMc01708at 504.800 kb on + strand, within SMc01708at 504.800 kb on + strand, within SMc01708at 504.800 kb on + strand, within SMc01708at 504.801 kb on - strand, within SMc01708at 504.801 kb on - strand, within SMc01708at 505.019 kb on + strand, within SMc01708at 505.020 kb on - strand, within SMc01708at 505.020 kb on - strand, within SMc01708at 505.055 kb on + strand, within SMc01708at 505.076 kb on + strand, within SMc01708at 505.077 kb on - strand, within SMc01708at 505.333 kb on + strand, within SMc01708at 505.550 kb on + strand, within SMc01708at 505.551 kb on - strand, within SMc01708at 505.551 kb on - strand, within SMc01708at 505.591 kb on + strand, within SMc01708at 505.670 kb on + strand, within SMc01708at 505.736 kb on + strand, within SMc01708at 505.737 kb on - strand, within SMc01708at 505.737 kb on - strand, within SMc01708at 505.737 kb on - strand, within SMc01708at 505.737 kb on - strand, within SMc01708at 505.737 kb on - strand, within SMc01708at 505.737 kb on - strand, within SMc01708at 505.738 kb on + strand, within SMc01708at 505.739 kb on - strand, within SMc01708at 505.778 kb on + strand, within SMc01708at 505.778 kb on + strand, within SMc01708at 505.778 kb on + strand, within SMc01708at 505.783 kb on + strand, within SMc01708at 505.783 kb on + strand, within SMc01708at 505.783 kb on + strand, within SMc01708at 505.937 kb on + strandat 505.937 kb on + strandat 505.938 kb on - strandat 505.938 kb on - strandat 505.983 kb on - strandat 506.027 kb on + strandat 506.027 kb on + strandat 506.414 kb on - strand, within SMc01707at 506.882 kb on + strandat 506.883 kb on - strandat 506.887 kb on + strandat 506.887 kb on + strandat 506.887 kb on + strandat 506.888 kb on - strandat 506.888 kb on - strandat 507.057 kb on - strand, within SMc01706at 507.156 kb on + strand, within SMc01706at 507.157 kb on - strand, within SMc01706at 507.157 kb on - strand, within SMc01706at 507.231 kb on - strand, within SMc01706at 507.274 kb on + strand, within SMc01706at 507.274 kb on + strand, within SMc01706at 507.275 kb on - strand, within SMc01706at 507.302 kb on + strand, within SMc01706at 507.302 kb on + strand, within SMc01706at 507.303 kb on - strand, within SMc01706

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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501,536 + SMc01709 0.53 -1.8
501,537 - SMc01709 0.53 -0.8
501,627 + SMc01709 0.71 -0.6
501,628 - SMc01709 0.71 -0.7
501,743 + -0.2
501,743 + -0.5
501,771 + -1.2
501,772 - -1.4
501,838 + +0.6
501,838 + -0.0
501,839 - -0.3
501,839 - -0.5
501,839 - +0.3
501,848 + -0.8
501,849 - -0.8
501,849 - -0.2
502,214 - +0.2
502,259 + +0.1
502,259 + +0.6
502,259 + +1.2
502,259 + -0.2
502,259 + +2.1
502,259 + +0.4
502,260 - +0.2
502,260 - -0.1
502,324 + +0.4
502,325 - -0.2
502,353 + -0.7
502,353 + +1.1
502,401 + -0.7
502,495 + +0.2
502,496 - +0.1
502,496 - -1.0
502,496 - -0.3
502,542 - -0.1
502,658 - -0.7
502,900 - SMc01708 0.12 +0.8
503,022 + SMc01708 0.15 +0.0
503,023 - SMc01708 0.15 -0.1
503,027 - SMc01708 0.15 -0.7
503,075 - SMc01708 0.16 -0.3
503,185 + SMc01708 0.19 -0.6
503,186 - SMc01708 0.19 -0.4
503,186 - SMc01708 0.19 +0.1
503,338 + SMc01708 0.23 +0.1
503,338 + SMc01708 0.23 +0.1
503,452 + SMc01708 0.26 +1.0
503,452 + SMc01708 0.26 +0.8
503,496 + SMc01708 0.27 +1.1
503,497 - SMc01708 0.27 -0.1
503,513 - SMc01708 0.28 -0.3
503,573 - SMc01708 0.29 +0.4
503,573 - SMc01708 0.29 +0.3
504,088 + SMc01708 0.43 -0.2
504,089 - SMc01708 0.43 +0.0
504,200 + SMc01708 0.46 +0.1
504,201 - SMc01708 0.46 -1.1
504,201 - SMc01708 0.46 -0.9
504,201 - SMc01708 0.46 +1.7
504,482 - SMc01708 0.53 -1.0
504,800 + SMc01708 0.61 -0.5
504,800 + SMc01708 0.61 +0.9
504,800 + SMc01708 0.61 +0.1
504,801 - SMc01708 0.61 -0.3
504,801 - SMc01708 0.61 -0.1
505,019 + SMc01708 0.67 -2.5
505,020 - SMc01708 0.67 -0.1
505,020 - SMc01708 0.67 -1.1
505,055 + SMc01708 0.68 -0.2
505,076 + SMc01708 0.68 +2.3
505,077 - SMc01708 0.68 +0.7
505,333 + SMc01708 0.75 +0.2
505,550 + SMc01708 0.80 +0.7
505,551 - SMc01708 0.80 -0.8
505,551 - SMc01708 0.80 -0.7
505,591 + SMc01708 0.81 +0.3
505,670 + SMc01708 0.83 +2.1
505,736 + SMc01708 0.85 -0.3
505,737 - SMc01708 0.85 +0.8
505,737 - SMc01708 0.85 +0.6
505,737 - SMc01708 0.85 +1.3
505,737 - SMc01708 0.85 +0.1
505,737 - SMc01708 0.85 +2.1
505,737 - SMc01708 0.85 -0.4
505,738 + SMc01708 0.85 -0.2
505,739 - SMc01708 0.85 +0.4
505,778 + SMc01708 0.86 -0.4
505,778 + SMc01708 0.86 -0.4
505,778 + SMc01708 0.86 -0.8
505,783 + SMc01708 0.86 -0.6
505,783 + SMc01708 0.86 +0.0
505,783 + SMc01708 0.86 +0.4
505,937 + -0.1
505,937 + -0.1
505,938 - +0.1
505,938 - +0.5
505,983 - +0.3
506,027 + -0.2
506,027 + +0.1
506,414 - SMc01707 0.16 -0.6
506,882 + +1.6
506,883 - -1.2
506,887 + -0.1
506,887 + -1.4
506,887 + +0.4
506,888 - -0.1
506,888 - +2.3
507,057 - SMc01706 0.10 -1.7
507,156 + SMc01706 0.27 -0.2
507,157 - SMc01706 0.27 +0.2
507,157 - SMc01706 0.27 -0.0
507,231 - SMc01706 0.40 +0.3
507,274 + SMc01706 0.48 -0.9
507,274 + SMc01706 0.48 -0.2
507,275 - SMc01706 0.48 -0.3
507,302 + SMc01706 0.53 -0.4
507,302 + SMc01706 0.53 +0.6
507,303 - SMc01706 0.53 -0.1

Or see this region's nucleotide sequence