Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01618 and SMc01619 overlap by 4 nucleotides SMc01619 and SMc01620 are separated by 13 nucleotides
SMc01618: SMc01618 - carbohydrate kinase, at 2,408,272 to 2,409,555
SMc01618
SMc01619: SMc01619 - hypothetical protein, at 2,409,552 to 2,410,607
SMc01619
SMc01620: SMc01620 - glycerol-3-phosphate dehydrogenase, at 2,410,621 to 2,412,135
SMc01620
Position (kb)
2409
2410
2411 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2408.606 kb on + strand, within SMc01618 at 2408.606 kb on + strand, within SMc01618 at 2408.751 kb on - strand, within SMc01618 at 2408.825 kb on - strand, within SMc01618 at 2408.825 kb on - strand, within SMc01618 at 2408.825 kb on - strand, within SMc01618 at 2408.895 kb on + strand, within SMc01618 at 2408.980 kb on + strand, within SMc01618 at 2408.991 kb on + strand, within SMc01618 at 2409.261 kb on + strand, within SMc01618 at 2409.263 kb on + strand, within SMc01618 at 2409.263 kb on + strand, within SMc01618 at 2409.263 kb on + strand, within SMc01618 at 2409.264 kb on - strand, within SMc01618 at 2409.264 kb on - strand, within SMc01618 at 2409.346 kb on + strand, within SMc01618 at 2409.346 kb on + strand, within SMc01618 at 2409.347 kb on - strand, within SMc01618 at 2409.347 kb on - strand, within SMc01618 at 2409.347 kb on - strand, within SMc01618 at 2409.347 kb on - strand, within SMc01618 at 2409.348 kb on + strand, within SMc01618 at 2409.348 kb on + strand, within SMc01618 at 2409.348 kb on + strand, within SMc01618 at 2409.348 kb on + strand, within SMc01618 at 2409.349 kb on - strand, within SMc01618 at 2409.349 kb on - strand, within SMc01618 at 2409.349 kb on - strand, within SMc01618 at 2409.349 kb on - strand, within SMc01618 at 2409.444 kb on + strand at 2410.178 kb on - strand, within SMc01619 at 2410.332 kb on - strand, within SMc01619 at 2410.748 kb on - strand at 2410.748 kb on - strand at 2410.748 kb on - strand at 2410.862 kb on + strand, within SMc01620 at 2410.863 kb on - strand, within SMc01620 at 2410.863 kb on - strand, within SMc01620 at 2410.863 kb on - strand, within SMc01620 at 2410.958 kb on - strand, within SMc01620 at 2411.113 kb on - strand, within SMc01620 at 2411.299 kb on - strand, within SMc01620 at 2411.378 kb on + strand, within SMc01620 at 2411.379 kb on - strand, within SMc01620 at 2411.379 kb on - strand, within SMc01620
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,408,606 + SMc01618 0.26 -0.2 2,408,606 + SMc01618 0.26 +1.5 2,408,751 - SMc01618 0.37 +1.5 2,408,825 - SMc01618 0.43 -0.7 2,408,825 - SMc01618 0.43 +0.2 2,408,825 - SMc01618 0.43 -0.2 2,408,895 + SMc01618 0.49 +2.6 2,408,980 + SMc01618 0.55 +0.0 2,408,991 + SMc01618 0.56 +0.5 2,409,261 + SMc01618 0.77 -0.7 2,409,263 + SMc01618 0.77 -0.0 2,409,263 + SMc01618 0.77 -0.7 2,409,263 + SMc01618 0.77 +0.1 2,409,264 - SMc01618 0.77 +0.2 2,409,264 - SMc01618 0.77 +0.1 2,409,346 + SMc01618 0.84 -1.6 2,409,346 + SMc01618 0.84 +0.2 2,409,347 - SMc01618 0.84 +0.4 2,409,347 - SMc01618 0.84 -0.3 2,409,347 - SMc01618 0.84 -0.3 2,409,347 - SMc01618 0.84 +0.4 2,409,348 + SMc01618 0.84 +1.1 2,409,348 + SMc01618 0.84 -0.9 2,409,348 + SMc01618 0.84 -2.4 2,409,348 + SMc01618 0.84 -0.9 2,409,349 - SMc01618 0.84 -0.6 2,409,349 - SMc01618 0.84 +2.1 2,409,349 - SMc01618 0.84 +0.6 2,409,349 - SMc01618 0.84 +0.1 2,409,444 + -1.1 2,410,178 - SMc01619 0.59 -1.0 2,410,332 - SMc01619 0.74 -1.8 2,410,748 - +0.1 2,410,748 - +0.5 2,410,748 - -0.3 2,410,862 + SMc01620 0.16 +0.0 2,410,863 - SMc01620 0.16 -0.5 2,410,863 - SMc01620 0.16 +0.8 2,410,863 - SMc01620 0.16 +0.1 2,410,958 - SMc01620 0.22 -0.0 2,411,113 - SMc01620 0.32 +0.1 2,411,299 - SMc01620 0.45 +0.2 2,411,378 + SMc01620 0.50 -1.2 2,411,379 - SMc01620 0.50 +0.2 2,411,379 - SMc01620 0.50 +0.2
Or see this region's nucleotide sequence