Strain Fitness in Sinorhizobium meliloti 1021 around SMc01366

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01368 and SMc01367 are separated by 12 nucleotidesSMc01367 and SMc01366 overlap by 4 nucleotidesSMc01366 and SMc01365 are separated by 36 nucleotides SMc01368: SMc01368 - transport transmembrane protein, at 1,412,223 to 1,413,407 SMc01368 SMc01367: SMc01367 - hypothetical protein, at 1,413,420 to 1,414,136 SMc01367 SMc01366: SMc01366 - hypothetical protein, at 1,414,133 to 1,414,588 SMc01366 SMc01365: SMc01365 - exoribonuclease II protein, at 1,414,625 to 1,416,994 SMc01365 Position (kb) 1414 1415Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1413.461 kb on - strandat 1413.698 kb on + strand, within SMc01367at 1413.698 kb on + strand, within SMc01367at 1413.713 kb on + strand, within SMc01367at 1413.714 kb on - strand, within SMc01367at 1413.716 kb on - strand, within SMc01367at 1413.716 kb on - strand, within SMc01367at 1413.786 kb on + strand, within SMc01367at 1413.828 kb on + strand, within SMc01367at 1413.961 kb on + strand, within SMc01367at 1413.961 kb on + strand, within SMc01367at 1413.961 kb on + strand, within SMc01367at 1413.962 kb on - strand, within SMc01367at 1414.310 kb on - strand, within SMc01366at 1414.336 kb on + strand, within SMc01366at 1414.336 kb on + strand, within SMc01366at 1414.338 kb on + strand, within SMc01366at 1414.338 kb on + strand, within SMc01366at 1414.379 kb on - strand, within SMc01366at 1414.379 kb on - strand, within SMc01366at 1414.380 kb on + strand, within SMc01366at 1414.781 kb on + strandat 1414.781 kb on + strandat 1414.782 kb on - strandat 1414.863 kb on + strand, within SMc01365at 1414.864 kb on - strand, within SMc01365at 1414.889 kb on - strand, within SMc01365at 1414.889 kb on - strand, within SMc01365at 1414.892 kb on + strand, within SMc01365at 1414.893 kb on - strand, within SMc01365at 1414.893 kb on - strand, within SMc01365at 1414.893 kb on - strand, within SMc01365at 1414.895 kb on - strand, within SMc01365at 1414.895 kb on - strand, within SMc01365at 1415.026 kb on + strand, within SMc01365at 1415.081 kb on - strand, within SMc01365at 1415.112 kb on - strand, within SMc01365at 1415.112 kb on - strand, within SMc01365at 1415.202 kb on + strand, within SMc01365at 1415.203 kb on - strand, within SMc01365at 1415.233 kb on + strand, within SMc01365at 1415.247 kb on + strand, within SMc01365at 1415.298 kb on + strand, within SMc01365at 1415.299 kb on - strand, within SMc01365at 1415.442 kb on + strand, within SMc01365at 1415.442 kb on + strand, within SMc01365at 1415.443 kb on - strand, within SMc01365at 1415.443 kb on - strand, within SMc01365

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,413,461 - +5.5
1,413,698 + SMc01367 0.39 -0.2
1,413,698 + SMc01367 0.39 +1.2
1,413,713 + SMc01367 0.41 -0.2
1,413,714 - SMc01367 0.41 -2.3
1,413,716 - SMc01367 0.41 +0.1
1,413,716 - SMc01367 0.41 +0.6
1,413,786 + SMc01367 0.51 -0.4
1,413,828 + SMc01367 0.57 +0.0
1,413,961 + SMc01367 0.75 +0.0
1,413,961 + SMc01367 0.75 -0.2
1,413,961 + SMc01367 0.75 +0.6
1,413,962 - SMc01367 0.76 -0.4
1,414,310 - SMc01366 0.39 -0.7
1,414,336 + SMc01366 0.45 -0.4
1,414,336 + SMc01366 0.45 -0.1
1,414,338 + SMc01366 0.45 -1.1
1,414,338 + SMc01366 0.45 -0.9
1,414,379 - SMc01366 0.54 +0.0
1,414,379 - SMc01366 0.54 -0.3
1,414,380 + SMc01366 0.54 -1.6
1,414,781 + -0.5
1,414,781 + +0.4
1,414,782 - -0.4
1,414,863 + SMc01365 0.10 -1.1
1,414,864 - SMc01365 0.10 -0.6
1,414,889 - SMc01365 0.11 -0.5
1,414,889 - SMc01365 0.11 +0.1
1,414,892 + SMc01365 0.11 +0.0
1,414,893 - SMc01365 0.11 +1.3
1,414,893 - SMc01365 0.11 -0.3
1,414,893 - SMc01365 0.11 +0.3
1,414,895 - SMc01365 0.11 -0.2
1,414,895 - SMc01365 0.11 -0.7
1,415,026 + SMc01365 0.17 +0.0
1,415,081 - SMc01365 0.19 +0.3
1,415,112 - SMc01365 0.21 -1.4
1,415,112 - SMc01365 0.21 +0.5
1,415,202 + SMc01365 0.24 +0.2
1,415,203 - SMc01365 0.24 +0.2
1,415,233 + SMc01365 0.26 -0.6
1,415,247 + SMc01365 0.26 -1.2
1,415,298 + SMc01365 0.28 +0.5
1,415,299 - SMc01365 0.28 -0.3
1,415,442 + SMc01365 0.34 -0.7
1,415,442 + SMc01365 0.34 -0.1
1,415,443 - SMc01365 0.35 -0.4
1,415,443 - SMc01365 0.35 -1.0

Or see this region's nucleotide sequence