Strain Fitness in Sinorhizobium meliloti 1021 around SMc01220

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01221 and SMc01220 overlap by 4 nucleotidesSMc01220 and SMc01219 are separated by 6 nucleotides SMc01221: SMc01221 - lipopolysaccharide core biosynthesis glycosyl transferase, at 1,702,990 to 1,704,021 SMc01221 SMc01220: SMc01220 - lipopolysaccharide core biosynthesis glycosyl transferase, at 1,704,018 to 1,705,040 SMc01220 SMc01219: SMc01219 - lipopolysaccharide core biosynthesis mannosyltransferase, at 1,705,047 to 1,706,102 SMc01219 Position (kb) 1704 1705 1706Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1703.139 kb on + strand, within SMc01221at 1703.140 kb on - strand, within SMc01221at 1703.146 kb on + strand, within SMc01221at 1703.146 kb on + strand, within SMc01221at 1703.146 kb on + strand, within SMc01221at 1703.146 kb on + strand, within SMc01221at 1703.146 kb on + strand, within SMc01221at 1703.147 kb on - strand, within SMc01221at 1703.147 kb on - strand, within SMc01221at 1703.147 kb on - strand, within SMc01221at 1703.237 kb on + strand, within SMc01221at 1703.237 kb on + strand, within SMc01221at 1703.238 kb on - strand, within SMc01221at 1703.332 kb on + strand, within SMc01221at 1703.335 kb on + strand, within SMc01221at 1703.335 kb on + strand, within SMc01221at 1703.337 kb on + strand, within SMc01221at 1703.337 kb on + strand, within SMc01221at 1703.337 kb on + strand, within SMc01221at 1703.338 kb on - strand, within SMc01221at 1703.338 kb on - strand, within SMc01221at 1703.338 kb on - strand, within SMc01221at 1703.529 kb on + strand, within SMc01221at 1703.529 kb on + strand, within SMc01221at 1703.579 kb on - strand, within SMc01221at 1703.687 kb on - strand, within SMc01221at 1703.687 kb on - strand, within SMc01221at 1703.786 kb on + strand, within SMc01221at 1703.786 kb on + strand, within SMc01221at 1704.073 kb on + strandat 1704.074 kb on - strandat 1704.342 kb on + strand, within SMc01220at 1704.361 kb on - strand, within SMc01220at 1704.361 kb on - strand, within SMc01220at 1704.442 kb on + strand, within SMc01220at 1704.442 kb on + strand, within SMc01220at 1704.443 kb on - strand, within SMc01220at 1704.443 kb on - strand, within SMc01220at 1704.569 kb on + strand, within SMc01220at 1704.569 kb on + strand, within SMc01220at 1704.570 kb on - strand, within SMc01220at 1704.606 kb on + strand, within SMc01220at 1705.011 kb on + strandat 1705.011 kb on + strandat 1705.011 kb on + strandat 1705.012 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,703,139 + SMc01221 0.14 +1.3
1,703,140 - SMc01221 0.15 -1.1
1,703,146 + SMc01221 0.15 +0.1
1,703,146 + SMc01221 0.15 -0.0
1,703,146 + SMc01221 0.15 +1.3
1,703,146 + SMc01221 0.15 +0.8
1,703,146 + SMc01221 0.15 +1.0
1,703,147 - SMc01221 0.15 +0.2
1,703,147 - SMc01221 0.15 -1.8
1,703,147 - SMc01221 0.15 -2.3
1,703,237 + SMc01221 0.24 -0.2
1,703,237 + SMc01221 0.24 +0.6
1,703,238 - SMc01221 0.24 -0.8
1,703,332 + SMc01221 0.33 +0.4
1,703,335 + SMc01221 0.33 +1.3
1,703,335 + SMc01221 0.33 +0.6
1,703,337 + SMc01221 0.34 +0.3
1,703,337 + SMc01221 0.34 -1.5
1,703,337 + SMc01221 0.34 +1.1
1,703,338 - SMc01221 0.34 -1.5
1,703,338 - SMc01221 0.34 -1.4
1,703,338 - SMc01221 0.34 -0.4
1,703,529 + SMc01221 0.52 +1.6
1,703,529 + SMc01221 0.52 -0.6
1,703,579 - SMc01221 0.57 +1.9
1,703,687 - SMc01221 0.68 -2.8
1,703,687 - SMc01221 0.68 -0.1
1,703,786 + SMc01221 0.77 +1.3
1,703,786 + SMc01221 0.77 +0.0
1,704,073 + -1.6
1,704,074 - -2.0
1,704,342 + SMc01220 0.32 -3.2
1,704,361 - SMc01220 0.34 -0.9
1,704,361 - SMc01220 0.34 -0.7
1,704,442 + SMc01220 0.41 -0.3
1,704,442 + SMc01220 0.41 +0.9
1,704,443 - SMc01220 0.42 -1.5
1,704,443 - SMc01220 0.42 -2.6
1,704,569 + SMc01220 0.54 -1.5
1,704,569 + SMc01220 0.54 -1.4
1,704,570 - SMc01220 0.54 -0.1
1,704,606 + SMc01220 0.57 -1.8
1,705,011 + -1.2
1,705,011 + -1.3
1,705,011 + -1.4
1,705,012 - -1.8

Or see this region's nucleotide sequence