Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01221 and SMc01220 overlap by 4 nucleotides SMc01220 and SMc01219 are separated by 6 nucleotides
SMc01221: SMc01221 - lipopolysaccharide core biosynthesis glycosyl transferase, at 1,702,990 to 1,704,021
SMc01221
SMc01220: SMc01220 - lipopolysaccharide core biosynthesis glycosyl transferase, at 1,704,018 to 1,705,040
SMc01220
SMc01219: SMc01219 - lipopolysaccharide core biosynthesis mannosyltransferase, at 1,705,047 to 1,706,102
SMc01219
Position (kb)
1704
1705
1706 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1703.139 kb on + strand, within SMc01221 at 1703.140 kb on - strand, within SMc01221 at 1703.146 kb on + strand, within SMc01221 at 1703.146 kb on + strand, within SMc01221 at 1703.146 kb on + strand, within SMc01221 at 1703.146 kb on + strand, within SMc01221 at 1703.146 kb on + strand, within SMc01221 at 1703.147 kb on - strand, within SMc01221 at 1703.147 kb on - strand, within SMc01221 at 1703.147 kb on - strand, within SMc01221 at 1703.237 kb on + strand, within SMc01221 at 1703.237 kb on + strand, within SMc01221 at 1703.238 kb on - strand, within SMc01221 at 1703.332 kb on + strand, within SMc01221 at 1703.335 kb on + strand, within SMc01221 at 1703.335 kb on + strand, within SMc01221 at 1703.337 kb on + strand, within SMc01221 at 1703.337 kb on + strand, within SMc01221 at 1703.337 kb on + strand, within SMc01221 at 1703.338 kb on - strand, within SMc01221 at 1703.338 kb on - strand, within SMc01221 at 1703.338 kb on - strand, within SMc01221 at 1703.529 kb on + strand, within SMc01221 at 1703.529 kb on + strand, within SMc01221 at 1703.579 kb on - strand, within SMc01221 at 1703.687 kb on - strand, within SMc01221 at 1703.687 kb on - strand, within SMc01221 at 1703.786 kb on + strand, within SMc01221 at 1703.786 kb on + strand, within SMc01221 at 1704.073 kb on + strand at 1704.074 kb on - strand at 1704.342 kb on + strand, within SMc01220 at 1704.361 kb on - strand, within SMc01220 at 1704.361 kb on - strand, within SMc01220 at 1704.442 kb on + strand, within SMc01220 at 1704.442 kb on + strand, within SMc01220 at 1704.443 kb on - strand, within SMc01220 at 1704.443 kb on - strand, within SMc01220 at 1704.569 kb on + strand, within SMc01220 at 1704.569 kb on + strand, within SMc01220 at 1704.570 kb on - strand, within SMc01220 at 1704.606 kb on + strand, within SMc01220 at 1705.011 kb on + strand at 1705.011 kb on + strand at 1705.011 kb on + strand at 1705.012 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,703,139 + SMc01221 0.14 +1.3 1,703,140 - SMc01221 0.15 -1.1 1,703,146 + SMc01221 0.15 +0.1 1,703,146 + SMc01221 0.15 -0.0 1,703,146 + SMc01221 0.15 +1.3 1,703,146 + SMc01221 0.15 +0.8 1,703,146 + SMc01221 0.15 +1.0 1,703,147 - SMc01221 0.15 +0.2 1,703,147 - SMc01221 0.15 -1.8 1,703,147 - SMc01221 0.15 -2.3 1,703,237 + SMc01221 0.24 -0.2 1,703,237 + SMc01221 0.24 +0.6 1,703,238 - SMc01221 0.24 -0.8 1,703,332 + SMc01221 0.33 +0.4 1,703,335 + SMc01221 0.33 +1.3 1,703,335 + SMc01221 0.33 +0.6 1,703,337 + SMc01221 0.34 +0.3 1,703,337 + SMc01221 0.34 -1.5 1,703,337 + SMc01221 0.34 +1.1 1,703,338 - SMc01221 0.34 -1.5 1,703,338 - SMc01221 0.34 -1.4 1,703,338 - SMc01221 0.34 -0.4 1,703,529 + SMc01221 0.52 +1.6 1,703,529 + SMc01221 0.52 -0.6 1,703,579 - SMc01221 0.57 +1.9 1,703,687 - SMc01221 0.68 -2.8 1,703,687 - SMc01221 0.68 -0.1 1,703,786 + SMc01221 0.77 +1.3 1,703,786 + SMc01221 0.77 +0.0 1,704,073 + -1.6 1,704,074 - -2.0 1,704,342 + SMc01220 0.32 -3.2 1,704,361 - SMc01220 0.34 -0.9 1,704,361 - SMc01220 0.34 -0.7 1,704,442 + SMc01220 0.41 -0.3 1,704,442 + SMc01220 0.41 +0.9 1,704,443 - SMc01220 0.42 -1.5 1,704,443 - SMc01220 0.42 -2.6 1,704,569 + SMc01220 0.54 -1.5 1,704,569 + SMc01220 0.54 -1.4 1,704,570 - SMc01220 0.54 -0.1 1,704,606 + SMc01220 0.57 -1.8 1,705,011 + -1.2 1,705,011 + -1.3 1,705,011 + -1.4 1,705,012 - -1.8
Or see this region's nucleotide sequence