Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01011 and SMc01012 are separated by 100 nucleotides SMc01012 and SMc01013 overlap by 1 nucleotides SMc01013 and SMc01014 are separated by 8 nucleotides
SMc01011: SMc01011 - hypothetical protein, at 1,536,883 to 1,537,878
SMc01011
SMc01012: SMc01012 - hypothetical protein, at 1,537,979 to 1,538,563
SMc01012
SMc01013: SMc01013 - hypothetical protein, at 1,538,563 to 1,539,165
SMc01013
SMc01014: SMc01014 - hypothetical protein, at 1,539,174 to 1,539,884
SMc01014
Position (kb)
1537
1538
1539 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1537.926 kb on - strand at 1537.961 kb on + strand at 1538.408 kb on + strand, within SMc01012 at 1538.430 kb on - strand, within SMc01012 at 1538.690 kb on - strand, within SMc01013 at 1538.690 kb on - strand, within SMc01013 at 1538.749 kb on + strand, within SMc01013 at 1538.983 kb on - strand, within SMc01013 at 1539.007 kb on + strand, within SMc01013 at 1539.007 kb on + strand, within SMc01013 at 1539.007 kb on + strand, within SMc01013 at 1539.008 kb on - strand, within SMc01013 at 1539.008 kb on - strand, within SMc01013 at 1539.008 kb on - strand, within SMc01013 at 1539.008 kb on - strand, within SMc01013 at 1539.109 kb on + strand at 1539.110 kb on - strand at 1539.110 kb on - strand at 1539.110 kb on - strand at 1539.119 kb on - strand at 1539.119 kb on - strand at 1539.119 kb on - strand at 1539.119 kb on - strand at 1539.119 kb on - strand at 1539.163 kb on + strand at 1539.175 kb on + strand at 1539.175 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,537,926 - -1.1 1,537,961 + -2.9 1,538,408 + SMc01012 0.73 -1.4 1,538,430 - SMc01012 0.77 -1.2 1,538,690 - SMc01013 0.21 -0.6 1,538,690 - SMc01013 0.21 +0.3 1,538,749 + SMc01013 0.31 -0.2 1,538,983 - SMc01013 0.70 +1.8 1,539,007 + SMc01013 0.74 +1.0 1,539,007 + SMc01013 0.74 -0.2 1,539,007 + SMc01013 0.74 +0.2 1,539,008 - SMc01013 0.74 +0.1 1,539,008 - SMc01013 0.74 -0.1 1,539,008 - SMc01013 0.74 -0.6 1,539,008 - SMc01013 0.74 -0.3 1,539,109 + +1.3 1,539,110 - -0.2 1,539,110 - -1.5 1,539,110 - +0.4 1,539,119 - -0.1 1,539,119 - -0.3 1,539,119 - +0.0 1,539,119 - -0.4 1,539,119 - +0.1 1,539,163 + +2.3 1,539,175 + -0.0 1,539,175 + -0.1
Or see this region's nucleotide sequence