Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00810 and SMc00811 overlap by 4 nucleotides SMc00811 and SMc00812 are separated by 4 nucleotides SMc00812 and SMc00813 are separated by 77 nucleotides
SMc00810: SMc00810 - hypothetical protein, at 830,836 to 832,176
SMc00810
SMc00811: SMc00811 - cell division protein, at 832,173 to 832,910
SMc00811
SMc00812: SMc00812 - hypothetical protein, at 832,915 to 833,298
SMc00812
SMc00813: SMc00813 - transport transmembrane protein, at 833,376 to 834,788
SMc00813
Position (kb) 832
833
834 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 832.908 kb on + strand at 832.908 kb on + strand at 832.908 kb on + strand at 832.922 kb on + strand at 832.922 kb on + strand at 832.922 kb on + strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.924 kb on + strand at 832.924 kb on + strand at 832.925 kb on - strand at 832.925 kb on - strand at 832.925 kb on - strand at 832.925 kb on - strand at 832.970 kb on - strand, within SMc00812 at 833.242 kb on + strand, within SMc00812 at 833.242 kb on + strand, within SMc00812 at 833.242 kb on + strand, within SMc00812 at 833.356 kb on + strand at 833.377 kb on + strand at 833.377 kb on + strand at 833.378 kb on - strand at 833.378 kb on - strand at 833.617 kb on - strand, within SMc00813 at 833.617 kb on - strand, within SMc00813 at 833.746 kb on + strand, within SMc00813 at 833.746 kb on + strand, within SMc00813 at 833.746 kb on + strand, within SMc00813 at 833.747 kb on - strand, within SMc00813 at 833.979 kb on + strand, within SMc00813 at 833.980 kb on - strand, within SMc00813 at 833.980 kb on - strand, within SMc00813 at 834.080 kb on + strand, within SMc00813 at 834.080 kb on + strand, within SMc00813 at 834.081 kb on - strand, within SMc00813 at 834.082 kb on + strand, within SMc00813 at 834.082 kb on + strand, within SMc00813 at 834.082 kb on + strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.086 kb on - strand, within SMc00813 at 834.215 kb on + strand, within SMc00813 at 834.256 kb on + strand, within SMc00813 at 834.256 kb on + strand, within SMc00813 at 834.257 kb on - strand, within SMc00813
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 832,908 + -0.1 832,908 + +6.0 832,908 + -0.8 832,922 + +0.4 832,922 + -0.3 832,922 + +0.7 832,923 - -0.7 832,923 - -1.7 832,923 - +0.1 832,923 - -1.0 832,923 - -1.3 832,923 - -0.7 832,924 + +1.0 832,924 + -0.3 832,925 - -2.3 832,925 - -0.9 832,925 - -0.8 832,925 - +0.1 832,970 - SMc00812 0.14 -0.6 833,242 + SMc00812 0.85 -0.9 833,242 + SMc00812 0.85 -0.4 833,242 + SMc00812 0.85 -1.9 833,356 + -0.2 833,377 + -1.2 833,377 + +0.6 833,378 - +0.1 833,378 - -0.2 833,617 - SMc00813 0.17 -0.2 833,617 - SMc00813 0.17 -0.1 833,746 + SMc00813 0.26 -0.3 833,746 + SMc00813 0.26 -0.4 833,746 + SMc00813 0.26 -0.4 833,747 - SMc00813 0.26 -0.3 833,979 + SMc00813 0.43 +0.6 833,980 - SMc00813 0.43 -0.1 833,980 - SMc00813 0.43 -1.6 834,080 + SMc00813 0.50 -0.0 834,080 + SMc00813 0.50 -0.1 834,081 - SMc00813 0.50 -0.0 834,082 + SMc00813 0.50 -1.8 834,082 + SMc00813 0.50 +0.3 834,082 + SMc00813 0.50 -0.8 834,083 - SMc00813 0.50 -0.1 834,083 - SMc00813 0.50 +0.4 834,083 - SMc00813 0.50 +0.0 834,083 - SMc00813 0.50 +0.0 834,083 - SMc00813 0.50 -0.1 834,086 - SMc00813 0.50 -1.0 834,215 + SMc00813 0.59 -0.2 834,256 + SMc00813 0.62 -0.1 834,256 + SMc00813 0.62 -0.3 834,257 - SMc00813 0.62 -1.7
Or see this region's nucleotide sequence