Strain Fitness in Sinorhizobium meliloti 1021 around SMc00675

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00676 and SMc00675 are separated by 87 nucleotidesSMc00675 and SMc00674 are separated by 33 nucleotidesSMc00674 and SMc00673 are separated by 128 nucleotides SMc00676: SMc00676 - amino acid-binding periplasmic signal peptide protein, at 2,901,501 to 2,902,496 SMc00676 SMc00675: SMc00675 - hypothetical protein, at 2,902,584 to 2,905,511 SMc00675 SMc00674: SMc00674 - histidine utilization repressor transcription regulator protein, at 2,905,545 to 2,906,288 SMc00674 SMc00673: SMc00673 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data), at 2,906,417 to 2,907,802 SMc00673 Position (kb) 2902 2903 2904 2905 2906Strain fitness (log2 ratio) -2 -1 0 1 2at 2901.661 kb on - strand, within SMc00676at 2901.714 kb on + strand, within SMc00676at 2901.843 kb on + strand, within SMc00676at 2901.843 kb on + strand, within SMc00676at 2901.844 kb on - strand, within SMc00676at 2901.844 kb on - strand, within SMc00676at 2901.846 kb on + strand, within SMc00676at 2901.846 kb on + strand, within SMc00676at 2901.847 kb on - strand, within SMc00676at 2901.847 kb on - strand, within SMc00676at 2901.964 kb on - strand, within SMc00676at 2901.988 kb on - strand, within SMc00676at 2902.081 kb on - strand, within SMc00676at 2902.222 kb on + strand, within SMc00676at 2902.222 kb on + strand, within SMc00676at 2902.222 kb on + strand, within SMc00676at 2902.222 kb on + strand, within SMc00676at 2902.223 kb on - strand, within SMc00676at 2902.356 kb on + strand, within SMc00676at 2902.585 kb on + strandat 2902.802 kb on - strandat 2902.985 kb on - strand, within SMc00675at 2903.079 kb on - strand, within SMc00675at 2903.191 kb on + strand, within SMc00675at 2903.191 kb on + strand, within SMc00675at 2903.192 kb on - strand, within SMc00675at 2903.242 kb on + strand, within SMc00675at 2903.323 kb on + strand, within SMc00675at 2903.363 kb on - strand, within SMc00675at 2903.363 kb on - strand, within SMc00675at 2903.473 kb on + strand, within SMc00675at 2903.473 kb on + strand, within SMc00675at 2903.474 kb on - strand, within SMc00675at 2903.474 kb on - strand, within SMc00675at 2903.636 kb on - strand, within SMc00675at 2903.636 kb on - strand, within SMc00675at 2903.636 kb on - strand, within SMc00675at 2903.636 kb on - strand, within SMc00675at 2903.636 kb on - strand, within SMc00675at 2903.744 kb on - strand, within SMc00675at 2903.744 kb on - strand, within SMc00675at 2903.744 kb on - strand, within SMc00675at 2903.810 kb on - strand, within SMc00675at 2903.812 kb on + strand, within SMc00675at 2903.812 kb on + strand, within SMc00675at 2903.812 kb on + strand, within SMc00675at 2903.812 kb on + strand, within SMc00675at 2903.813 kb on - strand, within SMc00675at 2903.833 kb on + strand, within SMc00675at 2903.833 kb on + strand, within SMc00675at 2903.834 kb on - strand, within SMc00675at 2903.834 kb on - strand, within SMc00675at 2903.834 kb on - strand, within SMc00675at 2903.984 kb on + strand, within SMc00675at 2903.984 kb on + strand, within SMc00675at 2904.202 kb on - strand, within SMc00675at 2904.202 kb on - strand, within SMc00675at 2904.268 kb on + strand, within SMc00675at 2904.565 kb on + strand, within SMc00675at 2904.565 kb on + strand, within SMc00675at 2904.565 kb on + strand, within SMc00675at 2904.566 kb on - strand, within SMc00675at 2904.755 kb on + strand, within SMc00675at 2904.756 kb on - strand, within SMc00675at 2904.802 kb on + strand, within SMc00675at 2905.160 kb on - strand, within SMc00675at 2905.180 kb on + strand, within SMc00675at 2905.181 kb on - strand, within SMc00675at 2905.268 kb on + strandat 2905.269 kb on - strandat 2905.318 kb on + strandat 2905.372 kb on + strandat 2905.423 kb on + strandat 2905.423 kb on + strandat 2905.423 kb on + strandat 2905.753 kb on + strand, within SMc00674at 2905.754 kb on - strand, within SMc00674at 2905.775 kb on + strand, within SMc00674at 2905.776 kb on - strand, within SMc00674at 2905.961 kb on + strand, within SMc00674at 2905.961 kb on + strand, within SMc00674at 2905.961 kb on + strand, within SMc00674at 2905.962 kb on - strand, within SMc00674at 2905.998 kb on - strand, within SMc00674at 2906.021 kb on + strand, within SMc00674at 2906.021 kb on + strand, within SMc00674at 2906.052 kb on + strand, within SMc00674at 2906.053 kb on - strand, within SMc00674at 2906.227 kb on + strandat 2906.280 kb on + strandat 2906.347 kb on + strandat 2906.375 kb on + strandat 2906.375 kb on + strandat 2906.391 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
2,901,661 - SMc00676 0.16 +0.1
2,901,714 + SMc00676 0.21 -0.2
2,901,843 + SMc00676 0.34 -0.0
2,901,843 + SMc00676 0.34 +0.4
2,901,844 - SMc00676 0.34 -0.6
2,901,844 - SMc00676 0.34 +0.0
2,901,846 + SMc00676 0.35 -0.1
2,901,846 + SMc00676 0.35 -1.4
2,901,847 - SMc00676 0.35 -0.0
2,901,847 - SMc00676 0.35 +0.4
2,901,964 - SMc00676 0.46 -1.7
2,901,988 - SMc00676 0.49 +0.8
2,902,081 - SMc00676 0.58 +0.6
2,902,222 + SMc00676 0.72 +0.0
2,902,222 + SMc00676 0.72 +0.0
2,902,222 + SMc00676 0.72 +0.5
2,902,222 + SMc00676 0.72 -0.7
2,902,223 - SMc00676 0.72 +1.3
2,902,356 + SMc00676 0.86 -0.4
2,902,585 + -0.1
2,902,802 - -2.4
2,902,985 - SMc00675 0.14 -0.0
2,903,079 - SMc00675 0.17 -1.4
2,903,191 + SMc00675 0.21 +0.1
2,903,191 + SMc00675 0.21 -1.5
2,903,192 - SMc00675 0.21 -2.2
2,903,242 + SMc00675 0.22 -0.2
2,903,323 + SMc00675 0.25 -0.8
2,903,363 - SMc00675 0.27 -1.0
2,903,363 - SMc00675 0.27 -1.0
2,903,473 + SMc00675 0.30 -1.0
2,903,473 + SMc00675 0.30 -1.6
2,903,474 - SMc00675 0.30 -1.0
2,903,474 - SMc00675 0.30 -0.7
2,903,636 - SMc00675 0.36 -0.7
2,903,636 - SMc00675 0.36 -0.9
2,903,636 - SMc00675 0.36 -0.1
2,903,636 - SMc00675 0.36 -1.3
2,903,636 - SMc00675 0.36 -1.3
2,903,744 - SMc00675 0.40 -1.1
2,903,744 - SMc00675 0.40 -0.3
2,903,744 - SMc00675 0.40 -0.9
2,903,810 - SMc00675 0.42 -1.5
2,903,812 + SMc00675 0.42 -0.6
2,903,812 + SMc00675 0.42 -0.4
2,903,812 + SMc00675 0.42 -1.0
2,903,812 + SMc00675 0.42 -1.7
2,903,813 - SMc00675 0.42 -1.0
2,903,833 + SMc00675 0.43 -0.5
2,903,833 + SMc00675 0.43 -1.3
2,903,834 - SMc00675 0.43 +0.3
2,903,834 - SMc00675 0.43 +0.2
2,903,834 - SMc00675 0.43 +0.8
2,903,984 + SMc00675 0.48 -0.7
2,903,984 + SMc00675 0.48 +0.4
2,904,202 - SMc00675 0.55 -2.1
2,904,202 - SMc00675 0.55 -0.9
2,904,268 + SMc00675 0.58 +1.6
2,904,565 + SMc00675 0.68 +0.8
2,904,565 + SMc00675 0.68 -0.7
2,904,565 + SMc00675 0.68 -0.4
2,904,566 - SMc00675 0.68 -0.9
2,904,755 + SMc00675 0.74 -0.1
2,904,756 - SMc00675 0.74 -1.2
2,904,802 + SMc00675 0.76 -0.8
2,905,160 - SMc00675 0.88 -0.1
2,905,180 + SMc00675 0.89 -0.8
2,905,181 - SMc00675 0.89 -0.9
2,905,268 + +0.9
2,905,269 - -0.6
2,905,318 + -1.0
2,905,372 + -0.6
2,905,423 + -0.5
2,905,423 + -0.5
2,905,423 + -0.4
2,905,753 + SMc00674 0.28 +0.3
2,905,754 - SMc00674 0.28 -0.3
2,905,775 + SMc00674 0.31 -1.3
2,905,776 - SMc00674 0.31 -1.6
2,905,961 + SMc00674 0.56 +0.8
2,905,961 + SMc00674 0.56 -0.0
2,905,961 + SMc00674 0.56 +0.5
2,905,962 - SMc00674 0.56 -0.9
2,905,998 - SMc00674 0.61 -1.0
2,906,021 + SMc00674 0.64 +0.2
2,906,021 + SMc00674 0.64 -0.4
2,906,052 + SMc00674 0.68 -1.3
2,906,053 - SMc00674 0.68 -0.6
2,906,227 + -0.1
2,906,280 + -0.0
2,906,347 + +2.2
2,906,375 + +0.6
2,906,375 + +1.3
2,906,391 + -0.3

Or see this region's nucleotide sequence