Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00394 and SMc00395 are separated by 106 nucleotides SMc00395 and SMc00396 overlap by 4 nucleotides SMc00396 and SMc00397 are separated by 151 nucleotides SMc00397 and SMc00460 overlap by 52 nucleotides
SMc00394: SMc00394 - GMP synthase, at 343,959 to 345,521
SMc00394
SMc00395: SMc00395 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, at 345,628 to 346,266
SMc00395
SMc00396: SMc00396 - hypothetical protein, at 346,263 to 346,715
SMc00396
SMc00397: SMc00397 - hypothetical protein, at 346,867 to 347,427
SMc00397
SMc00460: SMc00460 - hypothetical protein, at 347,376 to 348,509
SMc00460
Position (kb) 346
347 Strain fitness (log2 ratio) -2
-1
0
1
2 at 345.560 kb on - strand at 345.560 kb on - strand at 345.588 kb on - strand at 345.711 kb on - strand, within SMc00395 at 345.772 kb on + strand, within SMc00395 at 345.773 kb on - strand, within SMc00395 at 345.855 kb on - strand, within SMc00395 at 345.855 kb on - strand, within SMc00395 at 345.855 kb on - strand, within SMc00395 at 346.132 kb on + strand, within SMc00395 at 346.200 kb on - strand, within SMc00395 at 346.223 kb on + strand at 346.223 kb on + strand at 346.223 kb on + strand at 346.224 kb on - strand at 346.224 kb on - strand at 346.224 kb on - strand at 346.355 kb on - strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.507 kb on + strand, within SMc00396 at 346.508 kb on - strand, within SMc00396 at 346.798 kb on + strand at 346.799 kb on - strand at 346.799 kb on - strand at 346.864 kb on + strand at 346.864 kb on + strand at 346.865 kb on - strand at 346.865 kb on - strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.866 kb on + strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.867 kb on - strand at 346.875 kb on + strand at 346.994 kb on - strand, within SMc00397 at 347.162 kb on - strand, within SMc00397 at 347.162 kb on - strand, within SMc00397 at 347.162 kb on - strand, within SMc00397 at 347.170 kb on + strand, within SMc00397 at 347.171 kb on - strand, within SMc00397 at 347.302 kb on + strand, within SMc00397 at 347.377 kb on + strand at 347.378 kb on - strand at 347.495 kb on - strand, within SMc00460 at 347.548 kb on - strand, within SMc00460 at 347.548 kb on - strand, within SMc00460 at 347.665 kb on + strand, within SMc00460 at 347.666 kb on - strand, within SMc00460 at 347.666 kb on - strand, within SMc00460
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 345,560 - +1.4 345,560 - +2.0 345,588 - +2.6 345,711 - SMc00395 0.13 -0.4 345,772 + SMc00395 0.23 -0.8 345,773 - SMc00395 0.23 -0.4 345,855 - SMc00395 0.36 -0.7 345,855 - SMc00395 0.36 -0.4 345,855 - SMc00395 0.36 -2.3 346,132 + SMc00395 0.79 -0.1 346,200 - SMc00395 0.90 -0.5 346,223 + -0.5 346,223 + -0.8 346,223 + -0.1 346,224 - -0.1 346,224 - -1.0 346,224 - -0.5 346,355 - SMc00396 0.20 +0.9 346,507 + SMc00396 0.54 -1.6 346,507 + SMc00396 0.54 -0.4 346,507 + SMc00396 0.54 -1.4 346,508 - SMc00396 0.54 -1.6 346,798 + -0.4 346,799 - +0.8 346,799 - +0.3 346,864 + -0.5 346,864 + +0.4 346,865 - +0.6 346,865 - -0.1 346,866 + +0.7 346,866 + +0.4 346,866 + +2.2 346,866 + -0.9 346,866 + +0.1 346,866 + -0.2 346,866 + +0.7 346,866 + -0.9 346,867 - +0.4 346,867 - -0.2 346,867 - -0.7 346,867 - +0.6 346,867 - +0.1 346,875 + +0.2 346,994 - SMc00397 0.23 +1.2 347,162 - SMc00397 0.53 +0.7 347,162 - SMc00397 0.53 +0.4 347,162 - SMc00397 0.53 -0.4 347,170 + SMc00397 0.54 +0.5 347,171 - SMc00397 0.54 +0.2 347,302 + SMc00397 0.78 +0.6 347,377 + +0.1 347,378 - +0.1 347,495 - SMc00460 0.10 -0.1 347,548 - SMc00460 0.15 -0.2 347,548 - SMc00460 0.15 -2.1 347,665 + SMc00460 0.25 -1.5 347,666 - SMc00460 0.26 +0.3 347,666 - SMc00460 0.26 +0.8
Or see this region's nucleotide sequence