Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00377 and SMc00378 are separated by 118 nucleotides SMc00378 and SMc00379 overlap by 1 nucleotides SMc00379 and SMc00380 are separated by 8 nucleotides
SMc00377: SMc00377 - hypothetical protein, at 330,891 to 331,682
SMc00377
SMc00378: SMc00378 - exodeoxyribonuclease VII large subunit, at 331,801 to 333,381
SMc00378
SMc00379: SMc00379 - oxidoreductase, at 333,381 to 333,971
SMc00379
SMc00380: SMc00380 - transcriptional regulator, at 333,980 to 334,474
SMc00380
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -1
0
1
2 at 330.822 kb on + strand at 330.822 kb on + strand at 330.823 kb on - strand at 330.886 kb on + strand at 330.887 kb on - strand at 330.887 kb on - strand at 330.985 kb on + strand, within SMc00377 at 330.986 kb on - strand, within SMc00377 at 330.986 kb on - strand, within SMc00377 at 331.226 kb on + strand, within SMc00377 at 331.226 kb on + strand, within SMc00377 at 331.226 kb on + strand, within SMc00377 at 331.227 kb on - strand, within SMc00377 at 331.227 kb on - strand, within SMc00377 at 331.227 kb on - strand, within SMc00377 at 331.751 kb on - strand at 331.751 kb on - strand at 331.751 kb on - strand at 331.754 kb on + strand at 331.754 kb on + strand at 331.754 kb on + strand at 331.963 kb on + strand, within SMc00378 at 331.963 kb on + strand, within SMc00378 at 331.964 kb on - strand, within SMc00378 at 333.163 kb on + strand, within SMc00378 at 333.164 kb on - strand, within SMc00378 at 333.387 kb on - strand at 333.476 kb on + strand at 333.476 kb on + strand, within SMc00379 at 333.547 kb on - strand, within SMc00379 at 333.547 kb on - strand, within SMc00379 at 333.561 kb on + strand, within SMc00379 at 333.758 kb on - strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 330,822 + +0.2 330,822 + -0.3 330,823 - +0.9 330,886 + +0.4 330,887 - -0.3 330,887 - -0.3 330,985 + SMc00377 0.12 +0.1 330,986 - SMc00377 0.12 -0.2 330,986 - SMc00377 0.12 +0.2 331,226 + SMc00377 0.42 -0.2 331,226 + SMc00377 0.42 +1.5 331,226 + SMc00377 0.42 +0.3 331,227 - SMc00377 0.42 -0.5 331,227 - SMc00377 0.42 -0.8 331,227 - SMc00377 0.42 -0.5 331,751 - -1.1 331,751 - -0.0 331,751 - -0.9 331,754 + -0.3 331,754 + +0.0 331,754 + +0.3 331,963 + SMc00378 0.10 -1.3 331,963 + SMc00378 0.10 +0.9 331,964 - SMc00378 0.10 -1.3 333,163 + SMc00378 0.86 -0.2 333,164 - SMc00378 0.86 -1.0 333,387 - +0.2 333,476 + +1.8 333,476 + SMc00379 0.16 +0.0 333,547 - SMc00379 0.28 +0.3 333,547 - SMc00379 0.28 +1.3 333,561 + SMc00379 0.30 -0.8 333,758 - SMc00379 0.64 -1.2 333,807 + SMc00379 0.72 -0.5 333,807 + SMc00379 0.72 +0.5 333,807 + SMc00379 0.72 +0.8 333,807 + SMc00379 0.72 -0.0 333,936 - -0.4
Or see this region's nucleotide sequence