Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00351 and SMc00352 are separated by 1 nucleotides SMc00352 and SMc00353 are separated by 35 nucleotides SMc00353 and SMc00354 are separated by 176 nucleotides
SMc00351: SMc00351 - hypothetical protein, at 306,948 to 307,541
SMc00351
SMc00352: SMc00352 - acetyltransferase, at 307,543 to 308,070
SMc00352
SMc00353: SMc00353 - transmembrane protein, at 308,106 to 308,828
SMc00353
SMc00354: SMc00354 - hypothetical protein, at 309,005 to 309,670
SMc00354
Position (kb) 308
309 Strain fitness (log2 ratio) -1
0
1
2 at 307.252 kb on - strand, within SMc00351 at 307.509 kb on + strand at 307.510 kb on - strand at 307.781 kb on - strand, within SMc00352 at 307.963 kb on + strand, within SMc00352 at 307.963 kb on + strand, within SMc00352 at 307.964 kb on - strand, within SMc00352 at 308.030 kb on - strand at 308.050 kb on + strand at 308.068 kb on + strand at 308.068 kb on + strand at 308.068 kb on + strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.155 kb on + strand at 308.398 kb on + strand, within SMc00353 at 308.399 kb on - strand, within SMc00353 at 308.399 kb on - strand, within SMc00353 at 308.803 kb on - strand at 308.911 kb on - strand at 308.929 kb on + strand at 308.929 kb on + strand at 308.962 kb on + strand at 308.965 kb on + strand at 308.965 kb on + strand at 308.965 kb on + strand at 309.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 307,252 - SMc00351 0.51 +0.0 307,509 + +0.2 307,510 - +0.4 307,781 - SMc00352 0.45 +0.2 307,963 + SMc00352 0.80 -1.4 307,963 + SMc00352 0.80 +0.8 307,964 - SMc00352 0.80 +0.0 308,030 - +2.4 308,050 + -0.1 308,068 + -0.6 308,068 + +1.4 308,068 + -1.5 308,069 - -1.5 308,069 - -0.8 308,069 - -1.3 308,069 - -1.0 308,069 - -0.2 308,155 + -0.1 308,398 + SMc00353 0.40 +0.1 308,399 - SMc00353 0.41 -0.9 308,399 - SMc00353 0.41 -1.3 308,803 - +1.2 308,911 - +0.4 308,929 + +0.5 308,929 + -0.4 308,962 + -1.0 308,965 + +1.1 308,965 + -0.9 308,965 + -1.5 309,822 - -1.4
Or see this region's nucleotide sequence