Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00329 and SMc00330 are separated by 30 nucleotides SMc00330 and SMc00331 are separated by 63 nucleotides SMc00331 and SMc00435 are separated by 54 nucleotides SMc00435 and SMc00332 are separated by 245 nucleotides
SMc00329: SMc00329 - iron response regulator protein, at 283,769 to 284,191
SMc00329
SMc00330: SMc00330 - transmembrane protein, at 284,222 to 284,857
SMc00330
SMc00331: SMc00331 - hypothetical protein, at 284,921 to 285,928
SMc00331
SMc00435: SMc00435 - tRNA-Ala, at 285,983 to 286,058
SMc00435
SMc00332: SMc00332 - hypothetical protein, at 286,304 to 286,693
SMc00332
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2 at 284.018 kb on + strand, within SMc00329 at 284.018 kb on + strand, within SMc00329 at 284.019 kb on - strand, within SMc00329 at 284.019 kb on - strand, within SMc00329 at 284.160 kb on + strand at 284.409 kb on + strand, within SMc00330 at 284.556 kb on + strand, within SMc00330 at 284.585 kb on + strand, within SMc00330 at 284.585 kb on + strand, within SMc00330 at 284.898 kb on + strand at 284.898 kb on + strand at 284.898 kb on + strand at 284.899 kb on - strand at 284.899 kb on - strand at 284.899 kb on - strand at 284.899 kb on - strand at 284.902 kb on - strand at 284.958 kb on + strand at 284.958 kb on + strand at 285.118 kb on + strand, within SMc00331 at 285.193 kb on + strand, within SMc00331 at 285.195 kb on + strand, within SMc00331 at 285.195 kb on + strand, within SMc00331 at 285.303 kb on + strand, within SMc00331 at 285.304 kb on - strand, within SMc00331 at 285.811 kb on + strand, within SMc00331 at 285.811 kb on + strand, within SMc00331 at 285.812 kb on - strand, within SMc00331 at 285.833 kb on + strand at 285.834 kb on - strand at 285.889 kb on - strand at 285.907 kb on + strand at 285.946 kb on + strand at 285.947 kb on - strand at 285.947 kb on - strand at 285.964 kb on - strand at 286.179 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 284,018 + SMc00329 0.59 +0.5 284,018 + SMc00329 0.59 +1.3 284,019 - SMc00329 0.59 +0.9 284,019 - SMc00329 0.59 +1.7 284,160 + +1.1 284,409 + SMc00330 0.29 +0.8 284,556 + SMc00330 0.53 -0.5 284,585 + SMc00330 0.57 +0.2 284,585 + SMc00330 0.57 -0.1 284,898 + -0.2 284,898 + +2.4 284,898 + +0.1 284,899 - -0.3 284,899 - -1.9 284,899 - -0.9 284,899 - +1.0 284,902 - +0.3 284,958 + -2.3 284,958 + -1.5 285,118 + SMc00331 0.20 +1.0 285,193 + SMc00331 0.27 -2.2 285,195 + SMc00331 0.27 -2.2 285,195 + SMc00331 0.27 -2.3 285,303 + SMc00331 0.38 -1.9 285,304 - SMc00331 0.38 -2.4 285,811 + SMc00331 0.88 -0.1 285,811 + SMc00331 0.88 +0.4 285,812 - SMc00331 0.88 -1.6 285,833 + -1.1 285,834 - +0.3 285,889 - +2.2 285,907 + +0.5 285,946 + +0.6 285,947 - -1.4 285,947 - +0.1 285,964 - +0.6 286,179 - +0.7
Or see this region's nucleotide sequence