Strain Fitness in Sinorhizobium meliloti 1021 around SMa2029

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2027 and SMa2029 are separated by 154 nucleotidesSMa2029 and SMa2031 are separated by 10 nucleotidesSMa2031 and SMa2032 overlap by 163 nucleotides SMa2027: SMa2027 - LysR family transcriptional regulator, at 1,147,165 to 1,148,058 SMa2027 SMa2029: SMa2029 - amidohydrolase, at 1,148,213 to 1,148,863 SMa2029 SMa2031: SMa2031 - non-heme chloroperoxidase, at 1,148,874 to 1,149,245 SMa2031 SMa2032: SMa2032 - non-heme chloroperoxidase, at 1,149,083 to 1,149,382 SMa2032 Position (kb) 1148 1149Strain fitness (log2 ratio) -1 0 1 2 3 4at 1147.275 kb on - strand, within SMa2027at 1147.337 kb on + strand, within SMa2027at 1147.337 kb on + strand, within SMa2027at 1147.337 kb on + strand, within SMa2027at 1147.337 kb on + strand, within SMa2027at 1147.337 kb on + strand, within SMa2027at 1147.337 kb on + strand, within SMa2027at 1147.338 kb on - strand, within SMa2027at 1147.343 kb on + strand, within SMa2027at 1147.343 kb on + strand, within SMa2027at 1147.343 kb on + strand, within SMa2027at 1147.344 kb on - strand, within SMa2027at 1147.344 kb on - strand, within SMa2027at 1147.344 kb on - strand, within SMa2027at 1147.554 kb on - strand, within SMa2027at 1147.625 kb on + strand, within SMa2027at 1147.685 kb on + strand, within SMa2027at 1147.693 kb on - strand, within SMa2027at 1147.693 kb on - strand, within SMa2027at 1147.765 kb on - strand, within SMa2027at 1148.041 kb on + strandat 1148.042 kb on - strandat 1148.042 kb on - strandat 1148.042 kb on - strandat 1148.190 kb on - strandat 1148.224 kb on + strandat 1148.288 kb on + strand, within SMa2029at 1148.289 kb on - strand, within SMa2029at 1148.323 kb on + strand, within SMa2029at 1148.359 kb on - strand, within SMa2029at 1148.359 kb on - strand, within SMa2029at 1148.442 kb on + strand, within SMa2029at 1148.480 kb on - strand, within SMa2029at 1148.813 kb on + strandat 1148.814 kb on - strandat 1148.814 kb on - strandat 1149.121 kb on + strandat 1149.122 kb on - strandat 1149.122 kb on - strandat 1149.466 kb on + strandat 1149.467 kb on - strandat 1149.486 kb on - strandat 1149.500 kb on + strandat 1149.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,147,275 - SMa2027 0.12 -0.1
1,147,337 + SMa2027 0.19 -0.1
1,147,337 + SMa2027 0.19 +0.7
1,147,337 + SMa2027 0.19 +1.2
1,147,337 + SMa2027 0.19 -0.1
1,147,337 + SMa2027 0.19 -0.0
1,147,337 + SMa2027 0.19 +0.6
1,147,338 - SMa2027 0.19 -0.9
1,147,343 + SMa2027 0.20 +0.3
1,147,343 + SMa2027 0.20 -0.1
1,147,343 + SMa2027 0.20 +0.2
1,147,344 - SMa2027 0.20 -0.2
1,147,344 - SMa2027 0.20 -0.6
1,147,344 - SMa2027 0.20 -0.0
1,147,554 - SMa2027 0.44 -0.4
1,147,625 + SMa2027 0.51 -0.3
1,147,685 + SMa2027 0.58 -0.9
1,147,693 - SMa2027 0.59 +0.6
1,147,693 - SMa2027 0.59 +0.0
1,147,765 - SMa2027 0.67 +0.0
1,148,041 + -0.1
1,148,042 - -0.4
1,148,042 - -0.2
1,148,042 - +1.3
1,148,190 - -0.3
1,148,224 + +0.2
1,148,288 + SMa2029 0.12 +1.3
1,148,289 - SMa2029 0.12 -1.5
1,148,323 + SMa2029 0.17 +0.6
1,148,359 - SMa2029 0.22 +4.1
1,148,359 - SMa2029 0.22 +1.5
1,148,442 + SMa2029 0.35 +0.7
1,148,480 - SMa2029 0.41 -0.5
1,148,813 + +0.7
1,148,814 - -0.3
1,148,814 - -0.0
1,149,121 + -0.3
1,149,122 - +0.2
1,149,122 - +0.1
1,149,466 + -0.7
1,149,467 - -1.7
1,149,486 - +0.3
1,149,500 + -0.8
1,149,783 - +0.0

Or see this region's nucleotide sequence