Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1844 and SMa1846 are separated by 9 nucleotides SMa1846 and SMa1848 are separated by 34 nucleotides
SMa1844: SMa1844 - aldehyde, at 1,045,137 to 1,046,600
SMa1844
SMa1846: SMa1846 - 3-isopropylmalate dehydrogenase, at 1,046,610 to 1,047,653
SMa1846
SMa1848: SMa1848 - GabD5 succinate semialdehyde dehdyrogenase, at 1,047,688 to 1,049,142
SMa1848
Position (kb)
1046
1047
1048 Strain fitness (log2 ratio)
-1
0
1 at 1045.716 kb on + strand, within SMa1844 at 1045.717 kb on - strand, within SMa1844 at 1045.827 kb on - strand, within SMa1844 at 1045.827 kb on - strand, within SMa1844 at 1046.245 kb on - strand, within SMa1844 at 1046.383 kb on - strand, within SMa1844 at 1046.476 kb on - strand at 1046.514 kb on + strand at 1046.514 kb on + strand at 1046.514 kb on + strand at 1046.556 kb on + strand at 1046.556 kb on + strand at 1046.726 kb on + strand, within SMa1846 at 1046.754 kb on + strand, within SMa1846 at 1046.755 kb on - strand, within SMa1846 at 1046.755 kb on - strand, within SMa1846 at 1046.755 kb on - strand, within SMa1846 at 1046.756 kb on + strand, within SMa1846 at 1046.911 kb on - strand, within SMa1846 at 1046.911 kb on - strand, within SMa1846 at 1046.931 kb on - strand, within SMa1846 at 1046.931 kb on - strand, within SMa1846 at 1047.229 kb on - strand, within SMa1846 at 1047.252 kb on + strand, within SMa1846 at 1047.252 kb on + strand, within SMa1846 at 1047.253 kb on - strand, within SMa1846 at 1047.253 kb on - strand, within SMa1846 at 1047.253 kb on - strand, within SMa1846 at 1047.253 kb on - strand, within SMa1846 at 1047.456 kb on - strand, within SMa1846 at 1047.682 kb on - strand at 1048.308 kb on + strand, within SMa1848 at 1048.591 kb on + strand, within SMa1848 at 1048.592 kb on - strand, within SMa1848
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,045,716 + SMa1844 0.40 -0.7 1,045,717 - SMa1844 0.40 +0.0 1,045,827 - SMa1844 0.47 -0.0 1,045,827 - SMa1844 0.47 -0.6 1,046,245 - SMa1844 0.76 -0.9 1,046,383 - SMa1844 0.85 -0.5 1,046,476 - -0.6 1,046,514 + +0.3 1,046,514 + +0.2 1,046,514 + +0.2 1,046,556 + -1.1 1,046,556 + -0.5 1,046,726 + SMa1846 0.11 -0.3 1,046,754 + SMa1846 0.14 -0.8 1,046,755 - SMa1846 0.14 +0.7 1,046,755 - SMa1846 0.14 -0.9 1,046,755 - SMa1846 0.14 -0.4 1,046,756 + SMa1846 0.14 -1.5 1,046,911 - SMa1846 0.29 -0.4 1,046,911 - SMa1846 0.29 -1.6 1,046,931 - SMa1846 0.31 +0.1 1,046,931 - SMa1846 0.31 -0.0 1,047,229 - SMa1846 0.59 -0.1 1,047,252 + SMa1846 0.61 -0.4 1,047,252 + SMa1846 0.61 -1.2 1,047,253 - SMa1846 0.62 -0.1 1,047,253 - SMa1846 0.62 -0.5 1,047,253 - SMa1846 0.62 -0.6 1,047,253 - SMa1846 0.62 -0.8 1,047,456 - SMa1846 0.81 -0.4 1,047,682 - +0.4 1,048,308 + SMa1848 0.43 +0.3 1,048,591 + SMa1848 0.62 -1.3 1,048,592 - SMa1848 0.62 +0.0
Or see this region's nucleotide sequence