Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1750 and SMa1751 are separated by 382 nucleotides SMa1751 and SMa1753 are separated by 3 nucleotides
SMa1750: SMa1750 - hypothetical protein, at 992,912 to 994,291
SMa1750
SMa1751: SMa1751 - ABC transporter permease, at 994,674 to 995,456
SMa1751
SMa1753: SMa1753 - ABC transporter permease, at 995,460 to 996,638
SMa1753
Position (kb) 994
995
996 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 993.680 kb on + strand, within SMa1750 at 993.680 kb on + strand, within SMa1750 at 993.681 kb on - strand, within SMa1750 at 993.681 kb on - strand, within SMa1750 at 993.690 kb on - strand, within SMa1750 at 993.769 kb on + strand, within SMa1750 at 993.769 kb on + strand, within SMa1750 at 993.804 kb on + strand, within SMa1750 at 993.805 kb on - strand, within SMa1750 at 993.832 kb on - strand, within SMa1750 at 993.840 kb on + strand, within SMa1750 at 994.357 kb on + strand at 994.456 kb on - strand at 994.456 kb on - strand at 994.503 kb on + strand at 994.504 kb on - strand at 994.641 kb on - strand at 994.676 kb on - strand at 994.790 kb on + strand, within SMa1751 at 994.790 kb on + strand, within SMa1751 at 994.794 kb on - strand, within SMa1751 at 994.794 kb on - strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 994.899 kb on + strand, within SMa1751 at 995.071 kb on + strand, within SMa1751 at 995.072 kb on - strand, within SMa1751 at 995.072 kb on - strand, within SMa1751 at 995.152 kb on - strand, within SMa1751 at 995.152 kb on - strand, within SMa1751 at 995.206 kb on - strand, within SMa1751 at 995.206 kb on - strand, within SMa1751 at 995.345 kb on - strand, within SMa1751 at 995.497 kb on + strand at 995.498 kb on - strand at 995.498 kb on - strand at 995.498 kb on - strand at 995.498 kb on - strand at 995.582 kb on - strand, within SMa1753 at 995.582 kb on - strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.644 kb on + strand, within SMa1753 at 995.645 kb on - strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.647 kb on + strand, within SMa1753 at 995.648 kb on - strand, within SMa1753 at 995.653 kb on - strand, within SMa1753 at 995.790 kb on - strand, within SMa1753 at 995.800 kb on + strand, within SMa1753 at 995.840 kb on + strand, within SMa1753 at 995.841 kb on - strand, within SMa1753 at 996.053 kb on - strand, within SMa1753
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 993,680 + SMa1750 0.56 -1.6 993,680 + SMa1750 0.56 +0.3 993,681 - SMa1750 0.56 -0.1 993,681 - SMa1750 0.56 +0.3 993,690 - SMa1750 0.56 +0.1 993,769 + SMa1750 0.62 -0.7 993,769 + SMa1750 0.62 +0.2 993,804 + SMa1750 0.65 +0.6 993,805 - SMa1750 0.65 -0.1 993,832 - SMa1750 0.67 -0.4 993,840 + SMa1750 0.67 +0.2 994,357 + -0.1 994,456 - -0.3 994,456 - -1.5 994,503 + -0.3 994,504 - -0.0 994,641 - +1.5 994,676 - -0.6 994,790 + SMa1751 0.15 +0.5 994,790 + SMa1751 0.15 -0.9 994,794 - SMa1751 0.15 +2.7 994,794 - SMa1751 0.15 +2.2 994,899 + SMa1751 0.29 -0.9 994,899 + SMa1751 0.29 +0.6 994,899 + SMa1751 0.29 +0.1 994,899 + SMa1751 0.29 -0.6 995,071 + SMa1751 0.51 -0.2 995,072 - SMa1751 0.51 +0.5 995,072 - SMa1751 0.51 -1.2 995,152 - SMa1751 0.61 -0.1 995,152 - SMa1751 0.61 +0.6 995,206 - SMa1751 0.68 +2.8 995,206 - SMa1751 0.68 +0.7 995,345 - SMa1751 0.86 +0.3 995,497 + +0.7 995,498 - -0.3 995,498 - -0.0 995,498 - -0.2 995,498 - -0.6 995,582 - SMa1753 0.10 -1.9 995,582 - SMa1753 0.10 -1.2 995,644 + SMa1753 0.16 -1.5 995,644 + SMa1753 0.16 +0.2 995,644 + SMa1753 0.16 +0.5 995,645 - SMa1753 0.16 -0.1 995,647 + SMa1753 0.16 +0.2 995,647 + SMa1753 0.16 -0.1 995,647 + SMa1753 0.16 -0.9 995,647 + SMa1753 0.16 +0.0 995,647 + SMa1753 0.16 -0.3 995,648 - SMa1753 0.16 -0.1 995,653 - SMa1753 0.16 -0.6 995,790 - SMa1753 0.28 -0.0 995,800 + SMa1753 0.29 -0.2 995,840 + SMa1753 0.32 -0.3 995,841 - SMa1753 0.32 -2.1 996,053 - SMa1753 0.50 -0.3
Or see this region's nucleotide sequence