Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1672 and SMa1674 are separated by 96 nucleotides SMa1674 and SMa1675 overlap by 2 nucleotides SMa1675 and SMa1676 are separated by 60 nucleotides
SMa1672: SMa1672 - hypothetical protein, at 938,402 to 938,896
SMa1672
SMa1674: SMa1674 - hypothetical protein, at 938,993 to 939,304
SMa1674
SMa1675: SMa1675 - hypothetical protein, at 939,303 to 939,953
SMa1675
SMa1676: SMa1676 - hypothetical protein, at 940,014 to 941,072
SMa1676
Position (kb) 938
939
940 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 938.171 kb on + strand at 938.172 kb on - strand at 938.565 kb on + strand, within SMa1672 at 938.619 kb on + strand, within SMa1672 at 938.620 kb on - strand, within SMa1672 at 938.620 kb on - strand, within SMa1672 at 938.800 kb on + strand, within SMa1672 at 938.800 kb on + strand, within SMa1672 at 938.801 kb on - strand, within SMa1672 at 938.801 kb on - strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.803 kb on - strand, within SMa1672 at 938.995 kb on - strand at 939.016 kb on + strand at 939.017 kb on - strand at 939.081 kb on + strand, within SMa1674 at 939.082 kb on - strand, within SMa1674 at 939.103 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.269 kb on + strand, within SMa1674 at 939.497 kb on - strand, within SMa1675 at 939.498 kb on + strand, within SMa1675 at 939.498 kb on + strand, within SMa1675 at 939.499 kb on - strand, within SMa1675 at 939.499 kb on - strand, within SMa1675 at 939.556 kb on + strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.558 kb on + strand, within SMa1675 at 939.558 kb on + strand, within SMa1675 at 939.559 kb on - strand, within SMa1675 at 939.559 kb on - strand, within SMa1675 at 939.560 kb on + strand, within SMa1675 at 939.561 kb on - strand, within SMa1675 at 939.644 kb on + strand, within SMa1675 at 939.984 kb on + strand at 939.985 kb on - strand at 939.985 kb on - strand at 940.166 kb on - strand, within SMa1676 at 940.244 kb on - strand, within SMa1676
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 938,171 + -0.9 938,172 - +0.0 938,565 + SMa1672 0.33 -0.4 938,619 + SMa1672 0.44 +0.1 938,620 - SMa1672 0.44 -0.1 938,620 - SMa1672 0.44 -0.5 938,800 + SMa1672 0.80 -1.7 938,800 + SMa1672 0.80 +1.1 938,801 - SMa1672 0.81 +0.4 938,801 - SMa1672 0.81 +0.6 938,802 + SMa1672 0.81 +0.6 938,802 + SMa1672 0.81 -0.6 938,802 + SMa1672 0.81 -0.9 938,802 + SMa1672 0.81 +0.6 938,802 + SMa1672 0.81 -0.1 938,803 - SMa1672 0.81 -0.1 938,995 - +2.4 939,016 + -0.9 939,017 - -0.6 939,081 + SMa1674 0.28 +0.2 939,082 - SMa1674 0.29 +0.5 939,103 - SMa1674 0.35 +1.5 939,267 - SMa1674 0.88 -0.2 939,267 - SMa1674 0.88 +0.6 939,267 - SMa1674 0.88 +0.4 939,267 - SMa1674 0.88 +0.6 939,269 + SMa1674 0.88 -0.2 939,497 - SMa1675 0.30 -3.5 939,498 + SMa1675 0.30 -0.2 939,498 + SMa1675 0.30 -0.2 939,499 - SMa1675 0.30 -0.8 939,499 - SMa1675 0.30 -0.0 939,556 + SMa1675 0.39 -0.3 939,557 - SMa1675 0.39 -0.9 939,557 - SMa1675 0.39 +0.5 939,557 - SMa1675 0.39 +0.5 939,558 + SMa1675 0.39 -1.4 939,558 + SMa1675 0.39 +1.0 939,559 - SMa1675 0.39 +1.4 939,559 - SMa1675 0.39 +2.8 939,560 + SMa1675 0.39 +1.3 939,561 - SMa1675 0.40 -0.3 939,644 + SMa1675 0.52 -0.4 939,984 + -0.5 939,985 - +0.3 939,985 - -0.1 940,166 - SMa1676 0.14 -1.1 940,244 - SMa1676 0.22 -0.1
Or see this region's nucleotide sequence