Strain Fitness in Sinorhizobium meliloti 1021 around SMa1587

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1586 and SMa1587 are separated by 305 nucleotides SMa1586: SMa1586 - SyrB2 regulator, at 879,859 to 880,314 SMa1586 SMa1587: SMa1587 - EglC endo-1,3-1,4-BETA-glycanase, at 880,620 to 882,017 SMa1587 Position (kb) 880 881 882 883Strain fitness (log2 ratio) -2 -1 0 1 2at 879.650 kb on + strandat 879.651 kb on - strandat 879.651 kb on - strandat 879.689 kb on + strandat 879.689 kb on + strandat 879.696 kb on + strandat 879.697 kb on - strandat 879.714 kb on + strandat 879.715 kb on - strandat 880.018 kb on + strand, within SMa1586at 880.019 kb on - strand, within SMa1586at 880.038 kb on - strand, within SMa1586at 880.038 kb on - strand, within SMa1586at 880.041 kb on - strand, within SMa1586at 880.150 kb on - strand, within SMa1586at 880.150 kb on - strand, within SMa1586at 880.151 kb on + strand, within SMa1586at 880.239 kb on + strand, within SMa1586at 880.330 kb on + strandat 880.330 kb on + strandat 880.331 kb on - strandat 880.335 kb on - strandat 880.335 kb on - strandat 880.453 kb on + strandat 880.454 kb on - strandat 880.454 kb on - strandat 880.465 kb on - strandat 880.498 kb on + strandat 880.499 kb on - strandat 880.499 kb on - strandat 880.671 kb on - strandat 880.671 kb on - strandat 880.676 kb on + strandat 880.769 kb on + strand, within SMa1587at 880.797 kb on + strand, within SMa1587at 880.797 kb on + strand, within SMa1587at 880.797 kb on + strand, within SMa1587at 880.797 kb on + strand, within SMa1587at 880.798 kb on - strand, within SMa1587at 880.875 kb on + strand, within SMa1587at 880.876 kb on - strand, within SMa1587at 880.940 kb on + strand, within SMa1587at 880.940 kb on + strand, within SMa1587at 880.941 kb on - strand, within SMa1587at 881.120 kb on + strand, within SMa1587at 881.121 kb on - strand, within SMa1587at 881.196 kb on + strand, within SMa1587at 881.197 kb on - strand, within SMa1587at 881.213 kb on + strand, within SMa1587at 881.214 kb on - strand, within SMa1587at 881.403 kb on + strand, within SMa1587at 881.404 kb on - strand, within SMa1587at 881.526 kb on + strand, within SMa1587at 881.526 kb on + strand, within SMa1587at 881.526 kb on + strand, within SMa1587at 881.527 kb on - strand, within SMa1587at 881.527 kb on - strand, within SMa1587at 881.528 kb on + strand, within SMa1587at 881.550 kb on + strand, within SMa1587at 881.551 kb on - strand, within SMa1587at 881.571 kb on + strand, within SMa1587at 881.702 kb on + strand, within SMa1587at 881.777 kb on + strand, within SMa1587at 881.778 kb on - strand, within SMa1587at 881.796 kb on + strand, within SMa1587at 881.796 kb on + strand, within SMa1587at 881.797 kb on - strand, within SMa1587at 881.892 kb on + strandat 881.892 kb on + strandat 881.892 kb on + strandat 881.893 kb on - strandat 881.893 kb on - strandat 881.893 kb on - strandat 881.989 kb on - strandat 882.126 kb on - strandat 882.308 kb on + strandat 882.353 kb on - strandat 882.375 kb on - strandat 882.383 kb on + strandat 882.395 kb on + strandat 882.463 kb on - strandat 882.523 kb on + strandat 882.523 kb on + strandat 882.523 kb on + strandat 882.523 kb on + strandat 882.523 kb on + strandat 882.523 kb on + strandat 882.524 kb on - strandat 882.524 kb on - strandat 882.528 kb on - strandat 882.547 kb on + strandat 882.632 kb on + strandat 882.632 kb on + strandat 882.651 kb on + strandat 882.651 kb on + strandat 882.652 kb on - strandat 882.652 kb on - strandat 882.685 kb on + strandat 882.712 kb on + strandat 882.877 kb on + strandat 882.878 kb on - strandat 882.912 kb on + strandat 882.912 kb on + strandat 882.913 kb on - strandat 882.968 kb on + strandat 882.968 kb on + strandat 882.969 kb on - strandat 882.969 kb on - strandat 882.969 kb on - strandat 883.015 kb on + strandat 883.016 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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879,650 + -0.0
879,651 - +1.2
879,651 - -0.0
879,689 + +0.5
879,689 + +0.2
879,696 + -0.1
879,697 - +0.9
879,714 + -0.1
879,715 - -0.9
880,018 + SMa1586 0.35 +0.8
880,019 - SMa1586 0.35 -1.1
880,038 - SMa1586 0.39 -0.1
880,038 - SMa1586 0.39 -1.5
880,041 - SMa1586 0.40 -1.6
880,150 - SMa1586 0.64 -0.1
880,150 - SMa1586 0.64 +0.2
880,151 + SMa1586 0.64 +1.4
880,239 + SMa1586 0.83 -1.6
880,330 + -1.3
880,330 + -1.8
880,331 - +0.0
880,335 - +1.7
880,335 - -1.7
880,453 + -0.2
880,454 - -0.0
880,454 - +0.8
880,465 - +0.0
880,498 + -0.1
880,499 - +0.9
880,499 - -0.1
880,671 - +0.2
880,671 - +0.4
880,676 + +0.0
880,769 + SMa1587 0.11 +1.0
880,797 + SMa1587 0.13 +0.2
880,797 + SMa1587 0.13 -1.0
880,797 + SMa1587 0.13 +0.8
880,797 + SMa1587 0.13 -0.0
880,798 - SMa1587 0.13 +0.2
880,875 + SMa1587 0.18 +0.8
880,876 - SMa1587 0.18 +0.7
880,940 + SMa1587 0.23 -0.4
880,940 + SMa1587 0.23 -0.1
880,941 - SMa1587 0.23 -0.1
881,120 + SMa1587 0.36 -0.0
881,121 - SMa1587 0.36 +0.2
881,196 + SMa1587 0.41 +0.5
881,197 - SMa1587 0.41 +0.8
881,213 + SMa1587 0.42 +0.7
881,214 - SMa1587 0.42 -1.0
881,403 + SMa1587 0.56 -0.1
881,404 - SMa1587 0.56 +0.2
881,526 + SMa1587 0.65 +1.0
881,526 + SMa1587 0.65 +0.7
881,526 + SMa1587 0.65 -0.3
881,527 - SMa1587 0.65 -0.5
881,527 - SMa1587 0.65 +0.2
881,528 + SMa1587 0.65 +0.1
881,550 + SMa1587 0.67 -0.2
881,551 - SMa1587 0.67 +0.1
881,571 + SMa1587 0.68 -0.3
881,702 + SMa1587 0.77 -0.0
881,777 + SMa1587 0.83 -1.9
881,778 - SMa1587 0.83 -0.8
881,796 + SMa1587 0.84 +1.5
881,796 + SMa1587 0.84 -0.3
881,797 - SMa1587 0.84 +0.7
881,892 + +0.2
881,892 + -0.6
881,892 + -0.6
881,893 - +0.6
881,893 - -0.1
881,893 - +0.5
881,989 - -0.8
882,126 - +0.4
882,308 + -0.1
882,353 - -0.2
882,375 - +0.4
882,383 + +0.8
882,395 + +0.1
882,463 - +0.3
882,523 + +0.4
882,523 + +0.1
882,523 + +0.2
882,523 + +0.1
882,523 + +1.0
882,523 + -0.4
882,524 - +0.3
882,524 - +1.1
882,528 - +0.0
882,547 + -0.4
882,632 + -0.2
882,632 + +0.5
882,651 + -0.1
882,651 + +0.1
882,652 - +0.5
882,652 - +0.7
882,685 + -0.6
882,712 + -0.4
882,877 + +0.9
882,878 - -0.2
882,912 + -0.3
882,912 + -0.2
882,913 - +1.9
882,968 + -0.3
882,968 + +1.0
882,969 - +0.8
882,969 - +0.5
882,969 - -0.3
883,015 + +0.4
883,016 - -1.4

Or see this region's nucleotide sequence