Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1525 and SMa1526 are separated by 3 nucleotides SMa1526 and SMa1529 are separated by 18 nucleotides
SMa1525: SMa1525 - NuoF2 NADH I chain F, at 841,280 to 842,545
SMa1525
SMa1526: SMa1526 - NuoE2 NADH I chain E, at 842,549 to 843,055
SMa1526
SMa1529: SMa1529 - NuoD2 NADH I chain D, at 843,074 to 844,288
SMa1529
Position (kb) 842
843
844 Strain fitness (log2 ratio) -2
-1
0
1 at 841.769 kb on + strand, within SMa1525 at 841.770 kb on - strand, within SMa1525 at 841.788 kb on + strand, within SMa1525 at 841.788 kb on + strand, within SMa1525 at 841.824 kb on + strand, within SMa1525 at 841.856 kb on + strand, within SMa1525 at 841.856 kb on + strand, within SMa1525 at 841.891 kb on + strand, within SMa1525 at 842.038 kb on + strand, within SMa1525 at 842.038 kb on + strand, within SMa1525 at 842.039 kb on - strand, within SMa1525 at 842.040 kb on + strand, within SMa1525 at 842.041 kb on - strand, within SMa1525 at 842.041 kb on - strand, within SMa1525 at 842.153 kb on + strand, within SMa1525 at 842.166 kb on + strand, within SMa1525 at 842.167 kb on - strand, within SMa1525 at 842.167 kb on - strand, within SMa1525 at 842.182 kb on - strand, within SMa1525 at 842.182 kb on - strand, within SMa1525 at 842.187 kb on + strand, within SMa1525 at 842.188 kb on - strand, within SMa1525 at 842.188 kb on - strand, within SMa1525 at 842.188 kb on - strand, within SMa1525 at 842.188 kb on - strand, within SMa1525 at 842.211 kb on + strand, within SMa1525 at 842.211 kb on + strand, within SMa1525 at 842.316 kb on + strand, within SMa1525 at 842.317 kb on - strand, within SMa1525 at 842.317 kb on - strand, within SMa1525 at 842.434 kb on + strand at 842.434 kb on + strand at 842.550 kb on + strand at 842.550 kb on + strand at 842.675 kb on - strand, within SMa1526 at 842.874 kb on + strand, within SMa1526 at 842.892 kb on + strand, within SMa1526 at 843.075 kb on + strand at 843.138 kb on + strand at 843.139 kb on - strand at 843.238 kb on - strand, within SMa1529 at 843.238 kb on - strand, within SMa1529 at 843.238 kb on - strand, within SMa1529 at 843.238 kb on - strand, within SMa1529 at 843.277 kb on - strand, within SMa1529 at 843.391 kb on + strand, within SMa1529 at 843.538 kb on - strand, within SMa1529 at 843.538 kb on - strand, within SMa1529 at 843.655 kb on + strand, within SMa1529 at 843.684 kb on - strand, within SMa1529 at 843.696 kb on + strand, within SMa1529 at 843.719 kb on + strand, within SMa1529 at 843.793 kb on - strand, within SMa1529 at 843.865 kb on - strand, within SMa1529 at 843.895 kb on + strand, within SMa1529 at 843.961 kb on + strand, within SMa1529 at 843.963 kb on + strand, within SMa1529 at 843.964 kb on - strand, within SMa1529 at 843.987 kb on - strand, within SMa1529 at 844.047 kb on + strand, within SMa1529
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 841,769 + SMa1525 0.39 -1.1 841,770 - SMa1525 0.39 -1.3 841,788 + SMa1525 0.40 +0.3 841,788 + SMa1525 0.40 +0.2 841,824 + SMa1525 0.43 +0.3 841,856 + SMa1525 0.45 -0.1 841,856 + SMa1525 0.45 -0.3 841,891 + SMa1525 0.48 +0.0 842,038 + SMa1525 0.60 -0.4 842,038 + SMa1525 0.60 -1.3 842,039 - SMa1525 0.60 -0.3 842,040 + SMa1525 0.60 -0.3 842,041 - SMa1525 0.60 -0.2 842,041 - SMa1525 0.60 -0.3 842,153 + SMa1525 0.69 +0.2 842,166 + SMa1525 0.70 -0.4 842,167 - SMa1525 0.70 -0.4 842,167 - SMa1525 0.70 -0.5 842,182 - SMa1525 0.71 -2.2 842,182 - SMa1525 0.71 -1.8 842,187 + SMa1525 0.72 +0.1 842,188 - SMa1525 0.72 +0.9 842,188 - SMa1525 0.72 -0.6 842,188 - SMa1525 0.72 +0.2 842,188 - SMa1525 0.72 +0.2 842,211 + SMa1525 0.74 -0.7 842,211 + SMa1525 0.74 -0.2 842,316 + SMa1525 0.82 -0.7 842,317 - SMa1525 0.82 -0.6 842,317 - SMa1525 0.82 -0.3 842,434 + +0.4 842,434 + +0.9 842,550 + -0.7 842,550 + +0.6 842,675 - SMa1526 0.25 +0.8 842,874 + SMa1526 0.64 +0.2 842,892 + SMa1526 0.68 +0.7 843,075 + -1.0 843,138 + +0.4 843,139 - +0.1 843,238 - SMa1529 0.13 +0.5 843,238 - SMa1529 0.13 -0.2 843,238 - SMa1529 0.13 +0.2 843,238 - SMa1529 0.13 -1.0 843,277 - SMa1529 0.17 -1.1 843,391 + SMa1529 0.26 +0.1 843,538 - SMa1529 0.38 -0.1 843,538 - SMa1529 0.38 -0.0 843,655 + SMa1529 0.48 -0.2 843,684 - SMa1529 0.50 +0.1 843,696 + SMa1529 0.51 -0.2 843,719 + SMa1529 0.53 -0.5 843,793 - SMa1529 0.59 -1.2 843,865 - SMa1529 0.65 -1.2 843,895 + SMa1529 0.68 -0.3 843,961 + SMa1529 0.73 -0.3 843,963 + SMa1529 0.73 +0.2 843,964 - SMa1529 0.73 -0.3 843,987 - SMa1529 0.75 +0.5 844,047 + SMa1529 0.80 -0.2
Or see this region's nucleotide sequence