Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1440 and SMa1442 are separated by 60 nucleotides SMa1442 and SMa1445 are separated by 251 nucleotides
SMa1440: SMa1440 - 5-dehydro-4-deoxyglucarate dehydratase, at 794,368 to 795,273
SMa1440
SMa1442: SMa1442 - GntR family transcriptional regulator, at 795,334 to 796,098
SMa1442
SMa1445: SMa1445 - hypothetical protein, at 796,350 to 797,222
SMa1445
Position (kb) 795
796
797 Strain fitness (log2 ratio) -2
-1
0
1 at 794.401 kb on + strand at 794.402 kb on - strand at 794.402 kb on - strand at 794.548 kb on - strand, within SMa1440 at 794.709 kb on + strand, within SMa1440 at 794.853 kb on + strand, within SMa1440 at 794.906 kb on + strand, within SMa1440 at 794.906 kb on + strand, within SMa1440 at 794.906 kb on + strand, within SMa1440 at 794.906 kb on + strand, within SMa1440 at 794.907 kb on - strand, within SMa1440 at 794.907 kb on - strand, within SMa1440 at 794.907 kb on - strand, within SMa1440 at 794.907 kb on - strand, within SMa1440 at 794.937 kb on - strand, within SMa1440 at 795.049 kb on + strand, within SMa1440 at 795.049 kb on + strand, within SMa1440 at 795.616 kb on + strand, within SMa1442 at 795.619 kb on - strand, within SMa1442 at 795.856 kb on + strand, within SMa1442 at 795.998 kb on + strand, within SMa1442 at 795.998 kb on + strand, within SMa1442 at 795.999 kb on - strand, within SMa1442 at 795.999 kb on - strand, within SMa1442 at 796.025 kb on - strand at 796.026 kb on + strand at 796.027 kb on - strand at 796.077 kb on + strand at 796.091 kb on - strand at 796.236 kb on + strand at 796.396 kb on + strand at 796.489 kb on + strand, within SMa1445 at 796.489 kb on + strand, within SMa1445 at 796.489 kb on + strand, within SMa1445 at 796.490 kb on - strand, within SMa1445 at 796.490 kb on - strand, within SMa1445 at 796.490 kb on - strand, within SMa1445 at 796.490 kb on - strand, within SMa1445 at 796.658 kb on - strand, within SMa1445 at 796.689 kb on + strand, within SMa1445 at 796.835 kb on - strand, within SMa1445 at 796.835 kb on - strand, within SMa1445 at 796.935 kb on + strand, within SMa1445
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 794,401 + -0.6 794,402 - -0.5 794,402 - +0.6 794,548 - SMa1440 0.20 -0.7 794,709 + SMa1440 0.38 -0.8 794,853 + SMa1440 0.54 -0.8 794,906 + SMa1440 0.59 -0.7 794,906 + SMa1440 0.59 -0.4 794,906 + SMa1440 0.59 +1.6 794,906 + SMa1440 0.59 -0.2 794,907 - SMa1440 0.59 -0.5 794,907 - SMa1440 0.59 -0.1 794,907 - SMa1440 0.59 +1.5 794,907 - SMa1440 0.59 +0.1 794,937 - SMa1440 0.63 -1.2 795,049 + SMa1440 0.75 +0.2 795,049 + SMa1440 0.75 +0.6 795,616 + SMa1442 0.37 +0.4 795,619 - SMa1442 0.37 -2.0 795,856 + SMa1442 0.68 -1.1 795,998 + SMa1442 0.87 -0.7 795,998 + SMa1442 0.87 -0.9 795,999 - SMa1442 0.87 -0.6 795,999 - SMa1442 0.87 -0.9 796,025 - +0.6 796,026 + +0.5 796,027 - -0.2 796,077 + +0.3 796,091 - -0.5 796,236 + +0.5 796,396 + +0.3 796,489 + SMa1445 0.16 +0.0 796,489 + SMa1445 0.16 -0.2 796,489 + SMa1445 0.16 +1.0 796,490 - SMa1445 0.16 +0.0 796,490 - SMa1445 0.16 -2.4 796,490 - SMa1445 0.16 -0.1 796,490 - SMa1445 0.16 -1.0 796,658 - SMa1445 0.35 +0.2 796,689 + SMa1445 0.39 +0.2 796,835 - SMa1445 0.56 +0.1 796,835 - SMa1445 0.56 +0.0 796,935 + SMa1445 0.67 +0.4
Or see this region's nucleotide sequence