Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1236 and SMa1239 overlap by 26 nucleotides SMa1239 and SMa1240 overlap by 8 nucleotides SMa1240 and SMa1241 are separated by 7 nucleotides SMa1241 and SMa1243 are separated by 259 nucleotides
SMa1236: SMa1236 - nitrate reductase catalytic subunit, at 677,198 to 679,702
SMa1236
SMa1239: SMa1239 - NapD component of periplasmic nitrate reductase, at 679,677 to 679,964
SMa1239
SMa1240: SMa1240 - NapF ferredoxin component of periplasmic nitrate reductase, at 679,957 to 680,457
SMa1240
SMa1241: SMa1241 - NapE component of periplasmic nitrate reductase, at 680,465 to 680,650
SMa1241
SMa1243: SMa1243 - Azu1 pseudoazurin, at 680,910 to 681,353
SMa1243
Position (kb) 679
680 Strain fitness (log2 ratio) -2
-1
0
1 at 678.790 kb on - strand, within SMa1236 at 678.824 kb on - strand, within SMa1236 at 678.824 kb on - strand, within SMa1236 at 678.866 kb on - strand, within SMa1236 at 678.882 kb on + strand, within SMa1236 at 678.882 kb on + strand, within SMa1236 at 678.882 kb on + strand, within SMa1236 at 678.882 kb on + strand, within SMa1236 at 678.883 kb on - strand, within SMa1236 at 679.092 kb on + strand, within SMa1236 at 679.092 kb on + strand, within SMa1236 at 679.093 kb on - strand, within SMa1236 at 679.137 kb on + strand, within SMa1236 at 679.137 kb on + strand, within SMa1236 at 679.138 kb on - strand, within SMa1236 at 679.416 kb on + strand, within SMa1236 at 679.416 kb on + strand, within SMa1236 at 679.416 kb on + strand, within SMa1236 at 679.417 kb on - strand, within SMa1236 at 679.437 kb on + strand, within SMa1236 at 679.575 kb on - strand at 679.639 kb on + strand at 679.824 kb on + strand, within SMa1239 at 679.825 kb on - strand, within SMa1239 at 679.937 kb on + strand at 679.942 kb on + strand at 679.942 kb on + strand at 679.942 kb on + strand at 680.055 kb on + strand, within SMa1240 at 680.731 kb on - strand at 680.911 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 678,790 - SMa1236 0.64 -0.8 678,824 - SMa1236 0.65 -0.5 678,824 - SMa1236 0.65 +0.1 678,866 - SMa1236 0.67 -0.3 678,882 + SMa1236 0.67 -0.3 678,882 + SMa1236 0.67 +0.1 678,882 + SMa1236 0.67 -0.2 678,882 + SMa1236 0.67 -0.9 678,883 - SMa1236 0.67 -0.8 679,092 + SMa1236 0.76 +0.7 679,092 + SMa1236 0.76 +0.5 679,093 - SMa1236 0.76 -0.5 679,137 + SMa1236 0.77 +0.3 679,137 + SMa1236 0.77 +0.3 679,138 - SMa1236 0.77 +0.1 679,416 + SMa1236 0.89 +1.1 679,416 + SMa1236 0.89 -0.2 679,416 + SMa1236 0.89 -0.0 679,417 - SMa1236 0.89 -1.3 679,437 + SMa1236 0.89 -0.1 679,575 - +1.1 679,639 + +0.3 679,824 + SMa1239 0.51 -0.9 679,825 - SMa1239 0.51 -1.8 679,937 + +0.8 679,942 + -0.1 679,942 + +1.1 679,942 + +0.1 680,055 + SMa1240 0.20 -0.2 680,731 - +0.1 680,911 + +0.4
Or see this region's nucleotide sequence