Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0840 and SMa0841 are separated by 660 nucleotides SMa0841 and SMa5004 are separated by 8 nucleotides SMa5004 and SMa5029 are separated by 64 nucleotides SMa5029 and SMa0846 are separated by 20 nucleotides
SMa0840: SMa0840 - NodD3 nod box-dependent transcriptional activator, at 462,751 to 463,692
SMa0840
SMa0841: SMa0841 - transposase, fragment, at 464,353 to 464,802
SMa0841
SMa5004: SMa5004 - transposase, fragment, at 464,811 to 465,101
SMa5004
SMa5029: SMa5029 - transposase, fragment, at 465,166 to 465,342
SMa5029
SMa0846: SMa0846 - transposase, fragment, at 465,363 to 465,620
SMa0846
Position (kb) 464
465 Strain fitness (log2 ratio) -1
0
1 at 463.363 kb on + strand, within SMa0840 at 463.453 kb on + strand, within SMa0840 at 463.453 kb on + strand, within SMa0840 at 463.453 kb on + strand, within SMa0840 at 463.454 kb on - strand, within SMa0840 at 463.454 kb on - strand, within SMa0840 at 463.512 kb on + strand, within SMa0840 at 463.512 kb on + strand, within SMa0840 at 463.705 kb on - strand at 463.863 kb on + strand at 463.976 kb on + strand at 463.980 kb on + strand at 464.043 kb on + strand at 464.152 kb on + strand at 464.348 kb on - strand at 464.363 kb on + strand at 464.421 kb on + strand, within SMa0841 at 464.525 kb on + strand, within SMa0841 at 464.540 kb on + strand, within SMa0841 at 464.621 kb on - strand, within SMa0841 at 464.621 kb on - strand, within SMa0841 at 465.172 kb on + strand at 465.173 kb on - strand at 465.370 kb on + strand at 465.370 kb on + strand at 465.514 kb on + strand, within SMa0846 at 465.618 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 463,363 + SMa0840 0.65 -0.0 463,453 + SMa0840 0.75 +0.8 463,453 + SMa0840 0.75 -0.5 463,453 + SMa0840 0.75 +0.9 463,454 - SMa0840 0.75 -0.1 463,454 - SMa0840 0.75 +0.9 463,512 + SMa0840 0.81 -0.3 463,512 + SMa0840 0.81 -0.1 463,705 - -0.4 463,863 + -0.2 463,976 + +1.1 463,980 + +0.1 464,043 + +0.2 464,152 + -0.2 464,348 - -0.2 464,363 + -1.6 464,421 + SMa0841 0.15 +0.7 464,525 + SMa0841 0.38 -0.2 464,540 + SMa0841 0.42 +0.1 464,621 - SMa0841 0.60 +0.2 464,621 - SMa0841 0.60 +1.2 465,172 + +0.2 465,173 - -0.1 465,370 + +0.8 465,370 + +0.0 465,514 + SMa0846 0.59 +0.2 465,618 + -0.1
Or see this region's nucleotide sequence