Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0599 and SMa0601 are separated by 143 nucleotides SMa0601 and SMa0604 are separated by 621 nucleotides
SMa0599: SMa0599 - hypothetical protein, at 318,078 to 319,409
SMa0599
SMa0601: SMa0601 - hypothetical protein, at 319,553 to 321,799
SMa0601
SMa0604: SMa0604 - hypothetical protein, at 322,421 to 323,233
SMa0604
Position (kb) 319
320
321
322 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 318.564 kb on + strand, within SMa0599 at 318.784 kb on + strand, within SMa0599 at 318.844 kb on + strand, within SMa0599 at 318.844 kb on + strand, within SMa0599 at 318.844 kb on + strand, within SMa0599 at 318.845 kb on - strand, within SMa0599 at 318.850 kb on - strand, within SMa0599 at 318.850 kb on - strand, within SMa0599 at 319.011 kb on - strand, within SMa0599 at 319.147 kb on - strand, within SMa0599 at 319.147 kb on - strand, within SMa0599 at 319.224 kb on - strand, within SMa0599 at 319.412 kb on + strand at 319.413 kb on - strand at 319.413 kb on - strand at 319.438 kb on - strand at 319.476 kb on + strand at 319.476 kb on + strand at 319.548 kb on + strand at 319.548 kb on + strand at 319.549 kb on - strand at 319.779 kb on + strand, within SMa0601 at 319.779 kb on + strand, within SMa0601 at 319.899 kb on + strand, within SMa0601 at 319.899 kb on + strand, within SMa0601 at 319.900 kb on - strand, within SMa0601 at 319.900 kb on - strand, within SMa0601 at 319.900 kb on - strand, within SMa0601 at 319.900 kb on - strand, within SMa0601 at 320.065 kb on - strand, within SMa0601 at 320.065 kb on - strand, within SMa0601 at 320.065 kb on - strand, within SMa0601 at 320.066 kb on - strand, within SMa0601 at 320.337 kb on + strand, within SMa0601 at 320.338 kb on - strand, within SMa0601 at 320.408 kb on - strand, within SMa0601 at 320.450 kb on + strand, within SMa0601 at 320.450 kb on + strand, within SMa0601 at 320.499 kb on + strand, within SMa0601 at 320.500 kb on - strand at 320.500 kb on - strand, within SMa0601 at 320.735 kb on - strand, within SMa0601 at 320.901 kb on - strand, within SMa0601 at 321.004 kb on + strand, within SMa0601 at 321.073 kb on - strand, within SMa0601 at 321.073 kb on - strand, within SMa0601 at 321.075 kb on + strand, within SMa0601 at 321.075 kb on + strand at 321.075 kb on + strand, within SMa0601 at 321.076 kb on - strand, within SMa0601 at 321.145 kb on + strand, within SMa0601 at 321.223 kb on + strand, within SMa0601 at 321.223 kb on + strand, within SMa0601 at 321.223 kb on + strand, within SMa0601 at 321.224 kb on - strand, within SMa0601 at 321.224 kb on - strand, within SMa0601 at 321.225 kb on + strand, within SMa0601 at 321.225 kb on + strand, within SMa0601 at 321.226 kb on - strand, within SMa0601 at 321.276 kb on - strand, within SMa0601 at 321.276 kb on - strand, within SMa0601 at 321.418 kb on + strand, within SMa0601 at 321.487 kb on + strand, within SMa0601 at 321.487 kb on + strand, within SMa0601 at 321.488 kb on - strand, within SMa0601 at 321.488 kb on - strand, within SMa0601 at 321.488 kb on - strand, within SMa0601 at 321.513 kb on + strand, within SMa0601 at 321.514 kb on - strand, within SMa0601 at 321.514 kb on - strand, within SMa0601 at 321.517 kb on - strand, within SMa0601 at 321.517 kb on - strand, within SMa0601 at 321.619 kb on + strand at 321.620 kb on - strand at 321.621 kb on + strand at 321.621 kb on + strand at 321.621 kb on + strand at 321.622 kb on - strand at 321.622 kb on - strand at 321.669 kb on + strand at 321.669 kb on + strand at 321.670 kb on - strand at 321.670 kb on - strand at 321.670 kb on - strand at 321.811 kb on - strand at 321.922 kb on + strand at 321.922 kb on + strand at 321.995 kb on + strand at 321.996 kb on - strand at 322.002 kb on + strand at 322.002 kb on + strand at 322.002 kb on + strand at 322.008 kb on - strand at 322.030 kb on - strand at 322.044 kb on + strand at 322.045 kb on - strand at 322.373 kb on - strand at 322.400 kb on + strand at 322.400 kb on + strand at 322.401 kb on - strand at 322.401 kb on - strand at 322.401 kb on - strand at 322.403 kb on + strand at 322.403 kb on + strand at 322.403 kb on + strand at 322.404 kb on - strand at 322.404 kb on - strand at 322.617 kb on - strand, within SMa0604 at 322.621 kb on + strand, within SMa0604 at 322.622 kb on - strand, within SMa0604 at 322.664 kb on + strand, within SMa0604 at 322.732 kb on + strand, within SMa0604 at 322.733 kb on - strand, within SMa0604 at 322.733 kb on - strand, within SMa0604 at 322.776 kb on - strand, within SMa0604 at 322.789 kb on + strand, within SMa0604 at 322.789 kb on + strand, within SMa0604 at 322.789 kb on + strand, within SMa0604 at 322.790 kb on - strand, within SMa0604
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 318,564 + SMa0599 0.36 +0.3 318,784 + SMa0599 0.53 -0.1 318,844 + SMa0599 0.58 -0.4 318,844 + SMa0599 0.58 -0.4 318,844 + SMa0599 0.58 -0.7 318,845 - SMa0599 0.58 -0.5 318,850 - SMa0599 0.58 +0.1 318,850 - SMa0599 0.58 -0.4 319,011 - SMa0599 0.70 +0.9 319,147 - SMa0599 0.80 +1.1 319,147 - SMa0599 0.80 +0.1 319,224 - SMa0599 0.86 -0.4 319,412 + +1.2 319,413 - -1.9 319,413 - -0.2 319,438 - -1.9 319,476 + -0.3 319,476 + -0.8 319,548 + -0.6 319,548 + +0.0 319,549 - -0.5 319,779 + SMa0601 0.10 -2.1 319,779 + SMa0601 0.10 -0.2 319,899 + SMa0601 0.15 -0.4 319,899 + SMa0601 0.15 -0.1 319,900 - SMa0601 0.15 -0.2 319,900 - SMa0601 0.15 -0.1 319,900 - SMa0601 0.15 -0.6 319,900 - SMa0601 0.15 -0.4 320,065 - SMa0601 0.23 -0.7 320,065 - SMa0601 0.23 +0.3 320,065 - SMa0601 0.23 +0.0 320,066 - SMa0601 0.23 +1.2 320,337 + SMa0601 0.35 +0.8 320,338 - SMa0601 0.35 +0.2 320,408 - SMa0601 0.38 -1.1 320,450 + SMa0601 0.40 +0.3 320,450 + SMa0601 0.40 -1.1 320,499 + SMa0601 0.42 -0.3 320,500 - +0.2 320,500 - SMa0601 0.42 -0.4 320,735 - SMa0601 0.53 -0.2 320,901 - SMa0601 0.60 +0.5 321,004 + SMa0601 0.65 -0.6 321,073 - SMa0601 0.68 -0.2 321,073 - SMa0601 0.68 -1.4 321,075 + SMa0601 0.68 -0.5 321,075 + +0.2 321,075 + SMa0601 0.68 -0.2 321,076 - SMa0601 0.68 -0.9 321,145 + SMa0601 0.71 -0.6 321,223 + SMa0601 0.74 +0.3 321,223 + SMa0601 0.74 +1.1 321,223 + SMa0601 0.74 -0.3 321,224 - SMa0601 0.74 -0.1 321,224 - SMa0601 0.74 -0.2 321,225 + SMa0601 0.74 +0.0 321,225 + SMa0601 0.74 +0.7 321,226 - SMa0601 0.74 -0.7 321,276 - SMa0601 0.77 -2.9 321,276 - SMa0601 0.77 -0.8 321,418 + SMa0601 0.83 -0.1 321,487 + SMa0601 0.86 -0.9 321,487 + SMa0601 0.86 +0.0 321,488 - SMa0601 0.86 -0.9 321,488 - SMa0601 0.86 -0.5 321,488 - SMa0601 0.86 -0.3 321,513 + SMa0601 0.87 -0.8 321,514 - SMa0601 0.87 +0.8 321,514 - SMa0601 0.87 -1.1 321,517 - SMa0601 0.87 -1.5 321,517 - SMa0601 0.87 -0.8 321,619 + +0.4 321,620 - +0.7 321,621 + +0.5 321,621 + -0.9 321,621 + -0.7 321,622 - +0.1 321,622 - -0.2 321,669 + +0.6 321,669 + -0.5 321,670 - -0.4 321,670 - -0.2 321,670 - -0.5 321,811 - -1.6 321,922 + -0.6 321,922 + +0.4 321,995 + +1.6 321,996 - +0.2 322,002 + -0.1 322,002 + -2.1 322,002 + -0.1 322,008 - +0.0 322,030 - +0.2 322,044 + -1.8 322,045 - -0.1 322,373 - -0.5 322,400 + +1.0 322,400 + -0.8 322,401 - +1.2 322,401 - -0.4 322,401 - -0.3 322,403 + -1.2 322,403 + -0.2 322,403 + -2.8 322,404 - +0.6 322,404 - -0.4 322,617 - SMa0604 0.24 -0.1 322,621 + SMa0604 0.25 -1.0 322,622 - SMa0604 0.25 +0.7 322,664 + SMa0604 0.30 +0.1 322,732 + SMa0604 0.38 +1.0 322,733 - SMa0604 0.38 -0.3 322,733 - SMa0604 0.38 -0.3 322,776 - SMa0604 0.44 +0.4 322,789 + SMa0604 0.45 -2.3 322,789 + SMa0604 0.45 +0.3 322,789 + SMa0604 0.45 -0.4 322,790 - SMa0604 0.45 -0.2
Or see this region's nucleotide sequence