Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0394 and SMa0396 overlap by 4 nucleotides SMa0396 and SMa0398 overlap by 4 nucleotides
SMa0394: SMa0394 - ABC transporter permease, at 213,683 to 214,627
SMa0394
SMa0396: SMa0396 - ABC transporter permease, at 214,624 to 215,424
SMa0396
SMa0398: SMa0398 - histidinol dehydrogenase, at 215,421 to 216,791
SMa0398
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1
2 at 213.624 kb on + strand at 213.704 kb on + strand at 213.705 kb on - strand at 213.884 kb on - strand, within SMa0394 at 213.884 kb on - strand, within SMa0394 at 213.884 kb on - strand, within SMa0394 at 213.905 kb on + strand, within SMa0394 at 213.905 kb on + strand, within SMa0394 at 213.905 kb on + strand, within SMa0394 at 213.920 kb on + strand, within SMa0394 at 214.022 kb on + strand, within SMa0394 at 214.022 kb on + strand, within SMa0394 at 214.023 kb on - strand, within SMa0394 at 214.029 kb on - strand, within SMa0394 at 214.029 kb on - strand, within SMa0394 at 214.042 kb on + strand, within SMa0394 at 214.205 kb on + strand, within SMa0394 at 214.206 kb on - strand, within SMa0394 at 214.206 kb on - strand, within SMa0394 at 214.206 kb on - strand, within SMa0394 at 214.221 kb on + strand, within SMa0394 at 214.241 kb on + strand, within SMa0394 at 214.242 kb on - strand, within SMa0394 at 214.404 kb on + strand, within SMa0394 at 214.405 kb on - strand, within SMa0394 at 214.485 kb on - strand, within SMa0394 at 214.485 kb on - strand, within SMa0394 at 214.485 kb on - strand, within SMa0394 at 214.598 kb on - strand at 214.900 kb on + strand, within SMa0396 at 214.900 kb on + strand, within SMa0396 at 214.934 kb on - strand, within SMa0396 at 214.992 kb on - strand, within SMa0396 at 215.162 kb on - strand, within SMa0396 at 215.162 kb on - strand, within SMa0396 at 215.162 kb on - strand, within SMa0396 at 215.293 kb on + strand, within SMa0396 at 215.293 kb on + strand, within SMa0396 at 215.346 kb on - strand at 215.346 kb on - strand at 215.405 kb on - strand at 215.448 kb on + strand at 215.449 kb on - strand at 215.481 kb on + strand at 215.545 kb on + strand at 215.546 kb on - strand at 215.648 kb on - strand at 215.895 kb on - strand, within SMa0398 at 216.064 kb on - strand at 216.276 kb on + strand, within SMa0398 at 216.277 kb on - strand, within SMa0398
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 213,624 + -0.3 213,704 + -0.2 213,705 - -0.0 213,884 - SMa0394 0.21 +0.3 213,884 - SMa0394 0.21 -0.0 213,884 - SMa0394 0.21 -0.5 213,905 + SMa0394 0.23 +0.3 213,905 + SMa0394 0.23 -0.2 213,905 + SMa0394 0.23 -0.3 213,920 + SMa0394 0.25 -0.9 214,022 + SMa0394 0.36 -0.8 214,022 + SMa0394 0.36 +0.7 214,023 - SMa0394 0.36 -1.1 214,029 - SMa0394 0.37 +0.1 214,029 - SMa0394 0.37 -0.1 214,042 + SMa0394 0.38 +0.8 214,205 + SMa0394 0.55 +0.8 214,206 - SMa0394 0.55 -0.2 214,206 - SMa0394 0.55 -1.6 214,206 - SMa0394 0.55 +1.8 214,221 + SMa0394 0.57 -0.2 214,241 + SMa0394 0.59 -0.7 214,242 - SMa0394 0.59 -0.3 214,404 + SMa0394 0.76 +0.1 214,405 - SMa0394 0.76 -0.0 214,485 - SMa0394 0.85 +0.3 214,485 - SMa0394 0.85 -0.2 214,485 - SMa0394 0.85 -0.5 214,598 - +2.3 214,900 + SMa0396 0.34 -0.7 214,900 + SMa0396 0.34 -0.9 214,934 - SMa0396 0.39 -0.7 214,992 - SMa0396 0.46 -1.9 215,162 - SMa0396 0.67 -0.0 215,162 - SMa0396 0.67 +0.3 215,162 - SMa0396 0.67 +0.2 215,293 + SMa0396 0.84 -1.1 215,293 + SMa0396 0.84 -0.2 215,346 - +0.3 215,346 - -0.7 215,405 - -0.4 215,448 + +0.2 215,449 - -1.2 215,481 + -1.3 215,545 + +0.3 215,546 - -0.3 215,648 - +1.0 215,895 - SMa0398 0.35 +0.2 216,064 - +1.6 216,276 + SMa0398 0.62 +0.5 216,277 - SMa0398 0.62 +2.1
Or see this region's nucleotide sequence