Strain Fitness in Sinorhizobium meliloti 1021 around SMa0105

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0104 and SMa0105 are separated by 87 nucleotidesSMa0105 and SMa0106 are separated by 5 nucleotidesSMa0106 and SMa0108 overlap by 4 nucleotides SMa0104: SMa0104 - ABC transporter substrate-binding protein, at 52,944 to 54,536 SMa0104 SMa0105: SMa0105 - ABC transporter permease, at 54,624 to 55,559 SMa0105 SMa0106: SMa0106 - ABC transporter permease, at 55,565 to 56,386 SMa0106 SMa0108: SMa0108 - ABC transporter ATP-binding protein, at 56,383 to 57,297 SMa0108 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1at 53.727 kb on + strand, within SMa0104at 53.727 kb on + strand, within SMa0104at 53.728 kb on - strand, within SMa0104at 53.736 kb on + strand, within SMa0104at 53.737 kb on - strand, within SMa0104at 53.787 kb on + strand, within SMa0104at 53.788 kb on - strand, within SMa0104at 53.788 kb on - strand, within SMa0104at 53.788 kb on - strand, within SMa0104at 53.798 kb on + strand, within SMa0104at 53.977 kb on - strand, within SMa0104at 54.240 kb on + strand, within SMa0104at 54.282 kb on + strand, within SMa0104at 54.282 kb on + strand, within SMa0104at 54.282 kb on + strand, within SMa0104at 54.282 kb on + strand, within SMa0104at 54.283 kb on - strand, within SMa0104at 54.283 kb on - strand, within SMa0104at 54.283 kb on - strand, within SMa0104at 54.283 kb on - strand, within SMa0104at 54.309 kb on + strand, within SMa0104at 54.412 kb on - strandat 54.412 kb on - strandat 54.432 kb on + strandat 54.535 kb on - strandat 54.556 kb on + strandat 54.598 kb on - strandat 54.662 kb on - strandat 54.690 kb on - strandat 54.690 kb on - strandat 54.692 kb on - strandat 54.692 kb on - strandat 54.834 kb on + strand, within SMa0105at 54.834 kb on + strand, within SMa0105at 54.834 kb on + strand, within SMa0105at 54.835 kb on - strand, within SMa0105at 54.835 kb on - strand, within SMa0105at 54.835 kb on - strand, within SMa0105at 54.835 kb on - strand, within SMa0105at 55.019 kb on + strand, within SMa0105at 55.089 kb on + strand, within SMa0105at 55.089 kb on + strand, within SMa0105at 55.089 kb on + strand, within SMa0105at 55.090 kb on - strand, within SMa0105at 55.090 kb on - strand, within SMa0105at 55.090 kb on - strand, within SMa0105at 55.524 kb on + strandat 55.525 kb on - strandat 55.847 kb on + strand, within SMa0106at 55.984 kb on + strand, within SMa0106at 56.048 kb on + strand, within SMa0106at 56.049 kb on - strand, within SMa0106at 56.128 kb on + strand, within SMa0106at 56.497 kb on + strand, within SMa0108at 56.497 kb on + strand, within SMa0108

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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53,727 + SMa0104 0.49 +0.1
53,727 + SMa0104 0.49 +0.2
53,728 - SMa0104 0.49 -1.0
53,736 + SMa0104 0.50 -1.0
53,737 - SMa0104 0.50 -0.2
53,787 + SMa0104 0.53 -0.1
53,788 - SMa0104 0.53 +0.2
53,788 - SMa0104 0.53 +1.2
53,788 - SMa0104 0.53 +0.2
53,798 + SMa0104 0.54 -0.3
53,977 - SMa0104 0.65 -1.0
54,240 + SMa0104 0.81 +0.7
54,282 + SMa0104 0.84 -0.0
54,282 + SMa0104 0.84 -0.0
54,282 + SMa0104 0.84 -0.1
54,282 + SMa0104 0.84 -0.2
54,283 - SMa0104 0.84 -0.4
54,283 - SMa0104 0.84 +0.4
54,283 - SMa0104 0.84 +0.9
54,283 - SMa0104 0.84 +0.7
54,309 + SMa0104 0.86 -1.4
54,412 - +0.5
54,412 - -0.6
54,432 + +0.0
54,535 - +0.9
54,556 + +1.2
54,598 - +0.3
54,662 - +0.3
54,690 - -0.4
54,690 - -0.8
54,692 - -0.2
54,692 - -0.9
54,834 + SMa0105 0.22 +0.6
54,834 + SMa0105 0.22 +0.6
54,834 + SMa0105 0.22 -0.3
54,835 - SMa0105 0.23 -1.3
54,835 - SMa0105 0.23 +0.2
54,835 - SMa0105 0.23 -0.4
54,835 - SMa0105 0.23 -1.2
55,019 + SMa0105 0.42 -0.7
55,089 + SMa0105 0.50 -1.8
55,089 + SMa0105 0.50 +0.5
55,089 + SMa0105 0.50 -1.8
55,090 - SMa0105 0.50 -0.5
55,090 - SMa0105 0.50 -0.1
55,090 - SMa0105 0.50 -0.1
55,524 + +0.4
55,525 - +1.1
55,847 + SMa0106 0.34 -0.5
55,984 + SMa0106 0.51 +0.4
56,048 + SMa0106 0.59 +1.3
56,049 - SMa0106 0.59 -0.8
56,128 + SMa0106 0.68 +1.1
56,497 + SMa0108 0.12 -0.0
56,497 + SMa0108 0.12 -0.3

Or see this region's nucleotide sequence