Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0070 and SMa0072 overlap by 4 nucleotides SMa0072 and SMa0074 are separated by 7 nucleotides SMa0074 and SMa0077 overlap by 1 nucleotides
SMa0070: SMa0070 - ABC transporter permease, at 37,353 to 38,336
SMa0070
SMa0072: SMa0072 - ABC transporter ATP-binding protein, at 38,333 to 39,064
SMa0072
SMa0074: SMa0074 - 3-ketoacyl-ACP reductase, at 39,072 to 39,830
SMa0074
SMa0077: SMa0077 - hypothetical protein, at 39,830 to 40,717
SMa0077
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.828 kb on - strand, within SMa0070 at 37.828 kb on - strand, within SMa0070 at 37.828 kb on - strand, within SMa0070 at 38.377 kb on + strand at 38.377 kb on + strand at 38.377 kb on + strand at 38.378 kb on - strand at 38.378 kb on - strand at 38.378 kb on - strand at 38.378 kb on - strand at 38.538 kb on + strand, within SMa0072 at 38.538 kb on + strand, within SMa0072 at 38.588 kb on + strand, within SMa0072 at 38.588 kb on + strand, within SMa0072 at 38.589 kb on - strand, within SMa0072 at 38.589 kb on - strand, within SMa0072 at 38.589 kb on - strand, within SMa0072 at 38.594 kb on + strand, within SMa0072 at 38.595 kb on - strand, within SMa0072 at 39.255 kb on + strand, within SMa0074 at 39.255 kb on + strand, within SMa0074 at 39.256 kb on - strand, within SMa0074 at 39.276 kb on - strand, within SMa0074 at 39.280 kb on + strand, within SMa0074 at 39.281 kb on - strand, within SMa0074 at 39.281 kb on - strand, within SMa0074 at 39.305 kb on + strand, within SMa0074 at 39.400 kb on - strand, within SMa0074 at 39.534 kb on + strand, within SMa0074 at 39.534 kb on + strand, within SMa0074 at 39.534 kb on + strand, within SMa0074 at 39.535 kb on - strand, within SMa0074 at 39.535 kb on - strand, within SMa0074 at 39.543 kb on + strand, within SMa0074 at 39.543 kb on + strand, within SMa0074 at 39.543 kb on + strand, within SMa0074 at 39.544 kb on - strand, within SMa0074 at 39.544 kb on - strand, within SMa0074 at 39.547 kb on + strand, within SMa0074 at 39.547 kb on + strand, within SMa0074 at 39.548 kb on - strand, within SMa0074 at 39.548 kb on - strand, within SMa0074 at 39.690 kb on + strand, within SMa0074 at 39.690 kb on + strand, within SMa0074 at 39.691 kb on - strand, within SMa0074 at 39.691 kb on - strand, within SMa0074 at 39.691 kb on - strand, within SMa0074 at 39.691 kb on - strand, within SMa0074
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 37,686 + SMa0070 0.34 -0.4 37,686 + SMa0070 0.34 +0.4 37,686 + SMa0070 0.34 -1.0 37,686 + SMa0070 0.34 +0.3 37,827 + SMa0070 0.48 -0.6 37,827 + SMa0070 0.48 -0.6 37,827 + SMa0070 0.48 -0.4 37,828 - SMa0070 0.48 +0.8 37,828 - SMa0070 0.48 +0.7 37,828 - SMa0070 0.48 +0.5 38,377 + -0.1 38,377 + +0.7 38,377 + -1.2 38,378 - -1.2 38,378 - -0.1 38,378 - -0.4 38,378 - -1.3 38,538 + SMa0072 0.28 +0.5 38,538 + SMa0072 0.28 -0.2 38,588 + SMa0072 0.35 -1.3 38,588 + SMa0072 0.35 -0.6 38,589 - SMa0072 0.35 -1.6 38,589 - SMa0072 0.35 -0.6 38,589 - SMa0072 0.35 -0.8 38,594 + SMa0072 0.36 +0.2 38,595 - SMa0072 0.36 -0.1 39,255 + SMa0074 0.24 -0.3 39,255 + SMa0074 0.24 -0.4 39,256 - SMa0074 0.24 -1.0 39,276 - SMa0074 0.27 -0.1 39,280 + SMa0074 0.27 +0.1 39,281 - SMa0074 0.28 -0.5 39,281 - SMa0074 0.28 -0.6 39,305 + SMa0074 0.31 +0.4 39,400 - SMa0074 0.43 -0.6 39,534 + SMa0074 0.61 +0.1 39,534 + SMa0074 0.61 +0.1 39,534 + SMa0074 0.61 +0.6 39,535 - SMa0074 0.61 +0.1 39,535 - SMa0074 0.61 +0.0 39,543 + SMa0074 0.62 -0.3 39,543 + SMa0074 0.62 +0.5 39,543 + SMa0074 0.62 -0.0 39,544 - SMa0074 0.62 -0.8 39,544 - SMa0074 0.62 -0.3 39,547 + SMa0074 0.63 -1.0 39,547 + SMa0074 0.63 -0.3 39,548 - SMa0074 0.63 -0.2 39,548 - SMa0074 0.63 -0.5 39,690 + SMa0074 0.81 -0.8 39,690 + SMa0074 0.81 -0.5 39,691 - SMa0074 0.82 -0.6 39,691 - SMa0074 0.82 +1.0 39,691 - SMa0074 0.82 -0.0 39,691 - SMa0074 0.82 +0.3
Or see this region's nucleotide sequence