Strain Fitness in Sinorhizobium meliloti 1021 around SMa0005

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0002 and SMa0005 overlap by 4 nucleotidesSMa0005 and SMa0007 overlap by 23 nucleotidesSMa0007 and SMa0009 are separated by 38 nucleotides SMa0002: SMa0002 - formate dehydrogenase subunit alpha, at 1,353 to 4,457 SMa0002 SMa0005: SMa0005 - formate dehydrogenase susbunit beta, at 4,454 to 5,446 SMa0005 SMa0007: SMa0007 - formate dehydrogenase subunit gamma, at 5,424 to 6,110 SMa0007 SMa0009: SMa0009 - formate dehydrogenase subunit epsilon, at 6,149 to 7,069 SMa0009 Position (kb) 4 5 6Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3.635 kb on + strand, within SMa0002at 3.707 kb on + strand, within SMa0002at 3.724 kb on - strand, within SMa0002at 3.773 kb on + strand, within SMa0002at 3.774 kb on - strand, within SMa0002at 3.774 kb on - strand, within SMa0002at 3.774 kb on - strand, within SMa0002at 3.833 kb on + strand, within SMa0002at 3.935 kb on + strand, within SMa0002at 4.106 kb on + strand, within SMa0002at 4.179 kb on - strandat 4.180 kb on + strandat 4.181 kb on - strandat 4.399 kb on - strandat 4.449 kb on - strandat 4.453 kb on + strandat 4.453 kb on + strandat 4.453 kb on + strandat 4.454 kb on - strandat 4.454 kb on - strandat 4.516 kb on + strandat 4.691 kb on + strand, within SMa0005at 4.694 kb on + strand, within SMa0005at 4.695 kb on - strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.696 kb on + strand, within SMa0005at 4.697 kb on - strand, within SMa0005at 4.869 kb on - strand, within SMa0005at 4.923 kb on + strand, within SMa0005at 4.976 kb on + strandat 4.977 kb on - strandat 4.977 kb on - strand, within SMa0005at 5.126 kb on + strand, within SMa0005at 5.128 kb on + strand, within SMa0005at 5.129 kb on - strand, within SMa0005at 5.129 kb on - strand, within SMa0005at 5.129 kb on - strand, within SMa0005at 5.144 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.180 kb on + strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.181 kb on - strand, within SMa0005at 5.213 kb on + strand, within SMa0005at 5.213 kb on + strand, within SMa0005at 5.279 kb on + strand, within SMa0005at 5.279 kb on + strand, within SMa0005at 5.279 kb on + strand, within SMa0005at 5.280 kb on - strand, within SMa0005at 5.280 kb on - strand, within SMa0005at 5.280 kb on - strand, within SMa0005at 5.790 kb on + strand, within SMa0007at 5.790 kb on + strand, within SMa0007at 5.790 kb on + strand, within SMa0007at 5.791 kb on - strand, within SMa0007at 5.791 kb on - strand, within SMa0007at 5.877 kb on + strand, within SMa0007at 5.883 kb on + strand, within SMa0007at 5.884 kb on - strand, within SMa0007at 5.884 kb on - strand, within SMa0007at 5.884 kb on - strand, within SMa0007at 5.884 kb on - strand, within SMa0007at 5.890 kb on - strand, within SMa0007at 5.890 kb on - strand, within SMa0007at 5.890 kb on - strand, within SMa0007at 5.890 kb on - strand, within SMa0007at 5.891 kb on + strand, within SMa0007at 5.891 kb on + strandat 5.891 kb on + strand, within SMa0007at 5.892 kb on - strand, within SMa0007at 5.892 kb on - strand, within SMa0007at 5.892 kb on - strand, within SMa0007at 5.892 kb on - strand, within SMa0007at 5.892 kb on - strand, within SMa0007at 5.892 kb on - strand, within SMa0007at 5.977 kb on - strand, within SMa0007at 5.977 kb on - strand, within SMa0007at 5.977 kb on - strand, within SMa0007at 6.166 kb on - strandat 6.296 kb on + strand, within SMa0009at 6.297 kb on - strand, within SMa0009

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,635 + SMa0002 0.73 -1.5
3,707 + SMa0002 0.76 +2.9
3,724 - SMa0002 0.76 -0.1
3,773 + SMa0002 0.78 +1.7
3,774 - SMa0002 0.78 +1.6
3,774 - SMa0002 0.78 -0.6
3,774 - SMa0002 0.78 -1.2
3,833 + SMa0002 0.80 -0.4
3,935 + SMa0002 0.83 -1.0
4,106 + SMa0002 0.89 -0.8
4,179 - +0.8
4,180 + +0.0
4,181 - -1.0
4,399 - +0.6
4,449 - +0.1
4,453 + +0.1
4,453 + -0.9
4,453 + +0.4
4,454 - -1.0
4,454 - -0.3
4,516 + +4.3
4,691 + SMa0005 0.24 -0.5
4,694 + SMa0005 0.24 +0.4
4,695 - SMa0005 0.24 -0.4
4,696 + SMa0005 0.24 +0.6
4,696 + SMa0005 0.24 +0.1
4,696 + SMa0005 0.24 -0.0
4,696 + SMa0005 0.24 +0.0
4,696 + SMa0005 0.24 +0.4
4,697 - SMa0005 0.24 -0.6
4,869 - SMa0005 0.42 -0.7
4,923 + SMa0005 0.47 -1.2
4,976 + +1.3
4,977 - -0.5
4,977 - SMa0005 0.53 +0.1
5,126 + SMa0005 0.68 +0.0
5,128 + SMa0005 0.68 -0.4
5,129 - SMa0005 0.68 -0.9
5,129 - SMa0005 0.68 +0.0
5,129 - SMa0005 0.68 +0.7
5,144 + SMa0005 0.69 -0.2
5,180 + SMa0005 0.73 -1.5
5,180 + SMa0005 0.73 +1.3
5,180 + SMa0005 0.73 +0.9
5,180 + SMa0005 0.73 +0.1
5,180 + SMa0005 0.73 -0.1
5,180 + SMa0005 0.73 -0.3
5,180 + SMa0005 0.73 -0.4
5,180 + SMa0005 0.73 +0.4
5,180 + SMa0005 0.73 -1.0
5,181 - SMa0005 0.73 -1.4
5,181 - SMa0005 0.73 -1.8
5,181 - SMa0005 0.73 +0.3
5,181 - SMa0005 0.73 -0.9
5,181 - SMa0005 0.73 -0.1
5,181 - SMa0005 0.73 +0.4
5,181 - SMa0005 0.73 +1.5
5,213 + SMa0005 0.76 +0.5
5,213 + SMa0005 0.76 -1.0
5,279 + SMa0005 0.83 +0.3
5,279 + SMa0005 0.83 -1.3
5,279 + SMa0005 0.83 -0.2
5,280 - SMa0005 0.83 -0.4
5,280 - SMa0005 0.83 -0.3
5,280 - SMa0005 0.83 -0.2
5,790 + SMa0007 0.53 -0.2
5,790 + SMa0007 0.53 +0.3
5,790 + SMa0007 0.53 -1.0
5,791 - SMa0007 0.53 +0.5
5,791 - SMa0007 0.53 +0.0
5,877 + SMa0007 0.66 +0.4
5,883 + SMa0007 0.67 -0.1
5,884 - SMa0007 0.67 +0.1
5,884 - SMa0007 0.67 -0.7
5,884 - SMa0007 0.67 -0.8
5,884 - SMa0007 0.67 -1.3
5,890 - SMa0007 0.68 -0.9
5,890 - SMa0007 0.68 -0.4
5,890 - SMa0007 0.68 +0.0
5,890 - SMa0007 0.68 +0.1
5,891 + SMa0007 0.68 -0.3
5,891 + +1.3
5,891 + SMa0007 0.68 +0.6
5,892 - SMa0007 0.68 -0.3
5,892 - SMa0007 0.68 -0.5
5,892 - SMa0007 0.68 -0.8
5,892 - SMa0007 0.68 -0.9
5,892 - SMa0007 0.68 +1.0
5,892 - SMa0007 0.68 -0.3
5,977 - SMa0007 0.80 -1.6
5,977 - SMa0007 0.80 +0.1
5,977 - SMa0007 0.80 -1.2
6,166 - -0.8
6,296 + SMa0009 0.16 -0.7
6,297 - SMa0009 0.16 +0.5

Or see this region's nucleotide sequence