Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21586 and SM_b21587 are separated by 151 nucleotides SM_b21587 and SM_b21588 are separated by 142 nucleotides
SM_b21586: SM_b21586 - glutathione synthetase, at 1,125,697 to 1,126,743
_b21586
SM_b21587: SM_b21587 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,126,895 to 1,127,857
_b21587
SM_b21588: SM_b21588 - sugar uptake ABC transporter ATP-binding protein, at 1,128,000 to 1,129,517
_b21588
Position (kb)
1126
1127
1128 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1125.954 kb on - strand, within SM_b21586 at 1125.954 kb on - strand, within SM_b21586 at 1125.954 kb on - strand, within SM_b21586 at 1126.016 kb on - strand, within SM_b21586 at 1126.016 kb on - strand, within SM_b21586 at 1126.068 kb on - strand, within SM_b21586 at 1126.108 kb on + strand, within SM_b21586 at 1126.108 kb on + strand, within SM_b21586 at 1126.109 kb on - strand, within SM_b21586 at 1126.313 kb on - strand, within SM_b21586 at 1126.330 kb on + strand, within SM_b21586 at 1126.502 kb on + strand, within SM_b21586 at 1126.502 kb on + strand, within SM_b21586 at 1126.503 kb on - strand, within SM_b21586 at 1126.567 kb on - strand, within SM_b21586 at 1126.567 kb on - strand, within SM_b21586 at 1126.568 kb on + strand, within SM_b21586 at 1126.568 kb on + strand, within SM_b21586 at 1126.568 kb on + strand, within SM_b21586 at 1126.568 kb on + strand, within SM_b21586 at 1127.261 kb on + strand, within SM_b21587 at 1127.261 kb on + strand, within SM_b21587 at 1127.434 kb on + strand, within SM_b21587 at 1127.434 kb on + strand, within SM_b21587 at 1127.434 kb on + strand, within SM_b21587 at 1127.434 kb on + strand, within SM_b21587 at 1127.435 kb on - strand, within SM_b21587 at 1127.546 kb on + strand, within SM_b21587 at 1127.828 kb on + strand at 1127.828 kb on + strand at 1128.020 kb on + strand at 1128.265 kb on - strand, within SM_b21588 at 1128.294 kb on - strand, within SM_b21588 at 1128.432 kb on + strand, within SM_b21588 at 1128.432 kb on + strand, within SM_b21588 at 1128.433 kb on - strand, within SM_b21588 at 1128.433 kb on - strand, within SM_b21588 at 1128.560 kb on - strand, within SM_b21588 at 1128.621 kb on + strand, within SM_b21588
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,125,954 - SM_b21586 0.25 +0.4 1,125,954 - SM_b21586 0.25 -0.3 1,125,954 - SM_b21586 0.25 -0.4 1,126,016 - SM_b21586 0.30 -0.6 1,126,016 - SM_b21586 0.30 +0.4 1,126,068 - SM_b21586 0.35 +0.2 1,126,108 + SM_b21586 0.39 +0.4 1,126,108 + SM_b21586 0.39 +0.5 1,126,109 - SM_b21586 0.39 -0.1 1,126,313 - SM_b21586 0.59 +0.3 1,126,330 + SM_b21586 0.60 +0.7 1,126,502 + SM_b21586 0.77 -1.5 1,126,502 + SM_b21586 0.77 +0.0 1,126,503 - SM_b21586 0.77 -1.5 1,126,567 - SM_b21586 0.83 -0.3 1,126,567 - SM_b21586 0.83 +0.1 1,126,568 + SM_b21586 0.83 +0.1 1,126,568 + SM_b21586 0.83 +1.3 1,126,568 + SM_b21586 0.83 -0.3 1,126,568 + SM_b21586 0.83 +1.1 1,127,261 + SM_b21587 0.38 -0.3 1,127,261 + SM_b21587 0.38 +0.8 1,127,434 + SM_b21587 0.56 -0.4 1,127,434 + SM_b21587 0.56 -0.7 1,127,434 + SM_b21587 0.56 -1.7 1,127,434 + SM_b21587 0.56 -0.2 1,127,435 - SM_b21587 0.56 -0.1 1,127,546 + SM_b21587 0.68 -0.8 1,127,828 + -1.6 1,127,828 + +0.2 1,128,020 + -1.1 1,128,265 - SM_b21588 0.17 +0.8 1,128,294 - SM_b21588 0.19 -0.6 1,128,432 + SM_b21588 0.28 -0.1 1,128,432 + SM_b21588 0.28 -3.2 1,128,433 - SM_b21588 0.29 +1.0 1,128,433 - SM_b21588 0.29 -0.1 1,128,560 - SM_b21588 0.37 +0.1 1,128,621 + SM_b21588 0.41 +0.5
Or see this region's nucleotide sequence