Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21522 and SM_b21523 overlap by 4 nucleotides SM_b21523 and SM_b21524 are separated by 97 nucleotides SM_b21524 and SM_b20647 are separated by 296 nucleotides SM_b20647 and SM_b20648 are separated by 439 nucleotides
SM_b21522: SM_b21522 - cell division topological specificity factor MinE, at 1,446,108 to 1,446,371
_b21522
SM_b21523: SM_b21523 - cell division inhibitor protein, at 1,446,368 to 1,447,183
_b21523
SM_b21524: SM_b21524 - septum formation inhibitor, at 1,447,281 to 1,448,030
_b21524
SM_b20647: SM_b20647 - hypothetical protein, at 1,448,327 to 1,448,578
_b20647
SM_b20648: SM_b20648 - oxidoreductase, at 1,449,018 to 1,450,055
_b20648
Position (kb)
1447
1448
1449 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1446.390 kb on - strand at 1446.471 kb on + strand, within SM_b21523 at 1446.642 kb on + strand, within SM_b21523 at 1446.643 kb on - strand, within SM_b21523 at 1447.011 kb on + strand, within SM_b21523 at 1447.012 kb on - strand, within SM_b21523 at 1447.166 kb on + strand at 1447.167 kb on - strand at 1447.172 kb on + strand at 1447.253 kb on - strand at 1447.376 kb on - strand, within SM_b21524 at 1447.484 kb on + strand, within SM_b21524 at 1447.485 kb on - strand, within SM_b21524 at 1448.041 kb on + strand at 1448.041 kb on + strand at 1448.058 kb on + strand at 1448.206 kb on - strand at 1448.347 kb on + strand at 1448.366 kb on + strand, within SM_b20647 at 1448.366 kb on + strand, within SM_b20647 at 1448.366 kb on + strand, within SM_b20647 at 1448.367 kb on - strand, within SM_b20647 at 1448.367 kb on - strand, within SM_b20647 at 1448.367 kb on - strand, within SM_b20647 at 1448.367 kb on - strand, within SM_b20647 at 1448.830 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,446,390 - -0.3 1,446,471 + SM_b21523 0.13 -0.4 1,446,642 + SM_b21523 0.34 -0.8 1,446,643 - SM_b21523 0.34 -1.6 1,447,011 + SM_b21523 0.79 -1.5 1,447,012 - SM_b21523 0.79 -0.0 1,447,166 + -1.0 1,447,167 - -0.6 1,447,172 + -0.7 1,447,253 - -1.4 1,447,376 - SM_b21524 0.13 -0.2 1,447,484 + SM_b21524 0.27 -2.3 1,447,485 - SM_b21524 0.27 -1.4 1,448,041 + +0.6 1,448,041 + -1.1 1,448,058 + -0.7 1,448,206 - -0.8 1,448,347 + -0.1 1,448,366 + SM_b20647 0.15 -2.2 1,448,366 + SM_b20647 0.15 -0.1 1,448,366 + SM_b20647 0.15 +0.0 1,448,367 - SM_b20647 0.16 +1.8 1,448,367 - SM_b20647 0.16 -0.3 1,448,367 - SM_b20647 0.16 -0.3 1,448,367 - SM_b20647 0.16 -1.1 1,448,830 + +0.4
Or see this region's nucleotide sequence