Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21487 and SM_b21488 are separated by 37 nucleotides SM_b21488 and SM_b21489 overlap by 4 nucleotides SM_b21489 and SM_b22024 overlap by 4 nucleotides
SM_b21487: SM_b21487 - cytochrome o ubiquinol oxidase subunit II, at 1,408,291 to 1,409,451
_b21487
SM_b21488: SM_b21488 - cytochrome o ubiquinol oxidase subunit I, at 1,409,489 to 1,411,498
_b21488
SM_b21489: SM_b21489 - cytochrome O ubiquinol oxidase subunit III, at 1,411,495 to 1,412,127
_b21489
SM_b22024: SM_b22024 - cytochrome O ubiquinol oxidase CyoD, at 1,412,124 to 1,412,525
_b22024
Position (kb)
1409
1410
1411
1412 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1408.516 kb on + strand, within SM_b21487 at 1408.517 kb on - strand, within SM_b21487 at 1408.517 kb on - strand, within SM_b21487 at 1408.517 kb on - strand, within SM_b21487 at 1408.834 kb on + strand, within SM_b21487 at 1408.834 kb on + strand, within SM_b21487 at 1408.835 kb on - strand, within SM_b21487 at 1408.837 kb on - strand, within SM_b21487 at 1408.861 kb on + strand, within SM_b21487 at 1408.861 kb on + strand, within SM_b21487 at 1408.862 kb on - strand, within SM_b21487 at 1408.862 kb on - strand, within SM_b21487 at 1408.862 kb on - strand, within SM_b21487 at 1408.862 kb on - strand, within SM_b21487 at 1408.939 kb on + strand, within SM_b21487 at 1408.940 kb on - strand, within SM_b21487 at 1408.940 kb on - strand, within SM_b21487 at 1409.056 kb on + strand, within SM_b21487 at 1409.126 kb on - strand, within SM_b21487 at 1409.144 kb on + strand, within SM_b21487 at 1409.144 kb on + strand, within SM_b21487 at 1409.144 kb on + strand, within SM_b21487 at 1409.144 kb on + strand, within SM_b21487 at 1409.246 kb on - strand, within SM_b21487 at 1409.246 kb on - strand, within SM_b21487 at 1409.367 kb on + strand at 1409.534 kb on - strand at 1409.627 kb on + strand at 1409.628 kb on - strand at 1409.628 kb on - strand at 1409.630 kb on + strand at 1409.631 kb on - strand at 1409.699 kb on + strand, within SM_b21488 at 1409.700 kb on - strand, within SM_b21488 at 1409.700 kb on - strand, within SM_b21488 at 1409.700 kb on - strand, within SM_b21488 at 1409.796 kb on - strand, within SM_b21488 at 1410.035 kb on + strand, within SM_b21488 at 1410.060 kb on - strand, within SM_b21488 at 1410.084 kb on - strand, within SM_b21488 at 1410.086 kb on + strand, within SM_b21488 at 1410.087 kb on - strand, within SM_b21488 at 1410.290 kb on + strand, within SM_b21488 at 1410.341 kb on + strand, within SM_b21488 at 1410.342 kb on - strand, within SM_b21488 at 1410.342 kb on - strand, within SM_b21488 at 1410.342 kb on - strand, within SM_b21488 at 1410.342 kb on - strand at 1410.342 kb on - strand, within SM_b21488 at 1410.342 kb on - strand, within SM_b21488 at 1410.380 kb on + strand, within SM_b21488 at 1410.380 kb on + strand, within SM_b21488 at 1410.380 kb on + strand, within SM_b21488 at 1410.380 kb on + strand, within SM_b21488 at 1410.380 kb on + strand, within SM_b21488 at 1410.381 kb on - strand, within SM_b21488 at 1410.381 kb on - strand, within SM_b21488 at 1410.381 kb on - strand, within SM_b21488 at 1410.470 kb on + strand, within SM_b21488 at 1410.470 kb on + strand, within SM_b21488 at 1410.470 kb on + strand, within SM_b21488 at 1410.471 kb on - strand, within SM_b21488 at 1410.471 kb on - strand, within SM_b21488 at 1410.629 kb on + strand, within SM_b21488 at 1410.630 kb on - strand, within SM_b21488 at 1410.658 kb on + strand, within SM_b21488 at 1410.658 kb on + strand, within SM_b21488 at 1410.658 kb on + strand, within SM_b21488 at 1410.911 kb on + strand, within SM_b21488 at 1410.911 kb on + strand, within SM_b21488 at 1411.166 kb on + strand, within SM_b21488 at 1411.216 kb on + strand, within SM_b21488 at 1411.256 kb on - strand, within SM_b21488 at 1411.256 kb on - strand, within SM_b21488 at 1411.256 kb on - strand, within SM_b21488 at 1411.341 kb on - strand at 1411.410 kb on - strand at 1411.550 kb on - strand at 1411.603 kb on + strand, within SM_b21489 at 1411.603 kb on + strand, within SM_b21489 at 1411.604 kb on - strand, within SM_b21489 at 1411.669 kb on + strand, within SM_b21489 at 1411.787 kb on - strand, within SM_b21489 at 1412.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,408,516 + SM_b21487 0.19 +0.9 1,408,517 - SM_b21487 0.19 +2.0 1,408,517 - SM_b21487 0.19 +0.0 1,408,517 - SM_b21487 0.19 -0.1 1,408,834 + SM_b21487 0.47 +1.7 1,408,834 + SM_b21487 0.47 +0.9 1,408,835 - SM_b21487 0.47 +2.6 1,408,837 - SM_b21487 0.47 +2.2 1,408,861 + SM_b21487 0.49 -0.2 1,408,861 + SM_b21487 0.49 +1.0 1,408,862 - SM_b21487 0.49 +0.8 1,408,862 - SM_b21487 0.49 +0.3 1,408,862 - SM_b21487 0.49 +1.2 1,408,862 - SM_b21487 0.49 +1.1 1,408,939 + SM_b21487 0.56 +0.6 1,408,940 - SM_b21487 0.56 +0.7 1,408,940 - SM_b21487 0.56 +0.6 1,409,056 + SM_b21487 0.66 +1.1 1,409,126 - SM_b21487 0.72 +0.2 1,409,144 + SM_b21487 0.73 -0.5 1,409,144 + SM_b21487 0.73 +0.3 1,409,144 + SM_b21487 0.73 -0.0 1,409,144 + SM_b21487 0.73 +0.8 1,409,246 - SM_b21487 0.82 +0.5 1,409,246 - SM_b21487 0.82 +1.2 1,409,367 + -0.6 1,409,534 - +1.4 1,409,627 + +2.2 1,409,628 - -2.0 1,409,628 - +0.3 1,409,630 + -0.3 1,409,631 - +0.3 1,409,699 + SM_b21488 0.10 +0.6 1,409,700 - SM_b21488 0.10 +0.5 1,409,700 - SM_b21488 0.10 -0.0 1,409,700 - SM_b21488 0.10 +0.5 1,409,796 - SM_b21488 0.15 +1.4 1,410,035 + SM_b21488 0.27 +0.6 1,410,060 - SM_b21488 0.28 +0.3 1,410,084 - SM_b21488 0.30 +0.2 1,410,086 + SM_b21488 0.30 +0.4 1,410,087 - SM_b21488 0.30 +1.0 1,410,290 + SM_b21488 0.40 -0.1 1,410,341 + SM_b21488 0.42 -2.2 1,410,342 - SM_b21488 0.42 +1.0 1,410,342 - SM_b21488 0.42 +0.7 1,410,342 - SM_b21488 0.42 -0.2 1,410,342 - +4.2 1,410,342 - SM_b21488 0.42 -1.4 1,410,342 - SM_b21488 0.42 -0.2 1,410,380 + SM_b21488 0.44 -0.3 1,410,380 + SM_b21488 0.44 +0.8 1,410,380 + SM_b21488 0.44 +0.7 1,410,380 + SM_b21488 0.44 +1.3 1,410,380 + SM_b21488 0.44 +1.7 1,410,381 - SM_b21488 0.44 +0.3 1,410,381 - SM_b21488 0.44 +0.8 1,410,381 - SM_b21488 0.44 +0.7 1,410,470 + SM_b21488 0.49 +1.7 1,410,470 + SM_b21488 0.49 +1.2 1,410,470 + SM_b21488 0.49 +1.2 1,410,471 - SM_b21488 0.49 +0.1 1,410,471 - SM_b21488 0.49 +0.3 1,410,629 + SM_b21488 0.57 +1.5 1,410,630 - SM_b21488 0.57 +0.2 1,410,658 + SM_b21488 0.58 +0.1 1,410,658 + SM_b21488 0.58 +0.5 1,410,658 + SM_b21488 0.58 -0.1 1,410,911 + SM_b21488 0.71 +0.6 1,410,911 + SM_b21488 0.71 +0.6 1,411,166 + SM_b21488 0.83 +1.2 1,411,216 + SM_b21488 0.86 +0.4 1,411,256 - SM_b21488 0.88 +0.4 1,411,256 - SM_b21488 0.88 +1.7 1,411,256 - SM_b21488 0.88 +1.0 1,411,341 - +1.5 1,411,410 - -1.4 1,411,550 - -1.1 1,411,603 + SM_b21489 0.17 -0.2 1,411,603 + SM_b21489 0.17 +0.4 1,411,604 - SM_b21489 0.17 +2.2 1,411,669 + SM_b21489 0.27 -0.2 1,411,787 - SM_b21489 0.46 +1.2 1,412,105 - +0.1
Or see this region's nucleotide sequence