Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21374 and SM_b21375 are separated by 23 nucleotides SM_b21375 and SM_b21376 overlap by 4 nucleotides SM_b21376 and SM_b21377 are separated by 101 nucleotides
SM_b21374: SM_b21374 - tagatose kinase (EC 2.7.1.101) (from data) , at 1,038,999 to 1,039,940
_b21374
SM_b21375: SM_b21375 - sugar uptake ABC transporter permease, at 1,039,964 to 1,040,926
_b21375
SM_b21376: SM_b21376 - sugar uptake ABC transporter ATP-binding protein, at 1,040,923 to 1,042,434
_b21376
SM_b21377: SM_b21377 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,042,536 to 1,043,426
_b21377
Position (kb)
1040
1041
1042
1043 Strain fitness (log2 ratio)
-1
0
1 at 1039.929 kb on + strand at 1039.930 kb on - strand at 1039.930 kb on - strand at 1040.040 kb on + strand at 1040.041 kb on - strand at 1040.047 kb on - strand at 1040.047 kb on - strand at 1040.184 kb on + strand, within SM_b21375 at 1040.521 kb on - strand, within SM_b21375 at 1040.524 kb on + strand, within SM_b21375 at 1040.524 kb on + strand, within SM_b21375 at 1040.524 kb on + strand, within SM_b21375 at 1040.525 kb on - strand, within SM_b21375 at 1040.798 kb on + strand, within SM_b21375 at 1040.874 kb on + strand at 1040.874 kb on + strand at 1041.111 kb on - strand, within SM_b21376 at 1041.361 kb on + strand, within SM_b21376 at 1041.361 kb on + strand, within SM_b21376 at 1041.378 kb on + strand, within SM_b21376 at 1041.379 kb on - strand, within SM_b21376 at 1041.379 kb on - strand, within SM_b21376 at 1041.767 kb on + strand, within SM_b21376 at 1041.768 kb on - strand, within SM_b21376 at 1041.768 kb on - strand, within SM_b21376 at 1041.835 kb on - strand, within SM_b21376 at 1042.320 kb on + strand at 1042.320 kb on + strand at 1042.321 kb on - strand at 1042.321 kb on - strand at 1042.414 kb on - strand at 1042.496 kb on + strand at 1042.537 kb on + strand at 1042.537 kb on + strand at 1042.538 kb on - strand at 1042.538 kb on - strand at 1042.538 kb on - strand at 1042.547 kb on + strand at 1042.549 kb on + strand at 1042.561 kb on - strand at 1042.964 kb on - strand, within SM_b21377 at 1043.142 kb on + strand, within SM_b21377 at 1043.308 kb on + strand, within SM_b21377 at 1043.308 kb on + strand, within SM_b21377 at 1043.308 kb on + strand, within SM_b21377 at 1043.308 kb on + strand, within SM_b21377 at 1043.309 kb on - strand, within SM_b21377 at 1043.309 kb on - strand, within SM_b21377
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,039,929 + +0.9 1,039,930 - +1.1 1,039,930 - +1.2 1,040,040 + -0.7 1,040,041 - +0.4 1,040,047 - -0.0 1,040,047 - +0.8 1,040,184 + SM_b21375 0.23 -0.2 1,040,521 - SM_b21375 0.58 +0.4 1,040,524 + SM_b21375 0.58 +0.1 1,040,524 + SM_b21375 0.58 -0.3 1,040,524 + SM_b21375 0.58 -1.0 1,040,525 - SM_b21375 0.58 -0.1 1,040,798 + SM_b21375 0.87 -0.4 1,040,874 + -0.1 1,040,874 + -0.3 1,041,111 - SM_b21376 0.12 +0.0 1,041,361 + SM_b21376 0.29 -1.1 1,041,361 + SM_b21376 0.29 +0.2 1,041,378 + SM_b21376 0.30 +0.0 1,041,379 - SM_b21376 0.30 -0.5 1,041,379 - SM_b21376 0.30 +0.4 1,041,767 + SM_b21376 0.56 -0.8 1,041,768 - SM_b21376 0.56 -1.0 1,041,768 - SM_b21376 0.56 -0.1 1,041,835 - SM_b21376 0.60 -1.4 1,042,320 + -1.3 1,042,320 + +0.7 1,042,321 - -0.3 1,042,321 - +0.4 1,042,414 - -0.4 1,042,496 + +0.2 1,042,537 + +0.2 1,042,537 + -1.1 1,042,538 - +0.1 1,042,538 - -0.2 1,042,538 - +0.1 1,042,547 + +0.4 1,042,549 + -0.7 1,042,561 - +0.4 1,042,964 - SM_b21377 0.48 -0.0 1,043,142 + SM_b21377 0.68 +1.0 1,043,308 + SM_b21377 0.87 -0.5 1,043,308 + SM_b21377 0.87 -0.6 1,043,308 + SM_b21377 0.87 +0.9 1,043,308 + SM_b21377 0.87 +0.3 1,043,309 - SM_b21377 0.87 -0.9 1,043,309 - SM_b21377 0.87 -0.2
Or see this region's nucleotide sequence