Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21367 and SM_b21368 overlap by 4 nucleotides SM_b21368 and SM_b21369 are separated by 3 nucleotides
SM_b21367: SM_b21367 - cytochrome c class I protein, at 1,030,460 to 1,031,584
_b21367
SM_b21368: SM_b21368 - cytochrome c oxidase subunit II, at 1,031,581 to 1,032,564
_b21368
SM_b21369: SM_b21369 - hypothetical protein, at 1,032,568 to 1,033,641
_b21369
Position (kb)
1031
1032
1033 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1030.597 kb on + strand, within SM_b21367 at 1030.726 kb on - strand, within SM_b21367 at 1030.726 kb on - strand, within SM_b21367 at 1030.755 kb on + strand, within SM_b21367 at 1030.756 kb on - strand, within SM_b21367 at 1030.862 kb on + strand, within SM_b21367 at 1030.862 kb on + strand, within SM_b21367 at 1030.862 kb on + strand, within SM_b21367 at 1030.862 kb on + strand, within SM_b21367 at 1030.889 kb on - strand, within SM_b21367 at 1030.889 kb on - strand, within SM_b21367 at 1030.996 kb on + strand, within SM_b21367 at 1031.114 kb on + strand, within SM_b21367 at 1031.114 kb on + strand, within SM_b21367 at 1031.115 kb on - strand, within SM_b21367 at 1031.115 kb on - strand, within SM_b21367 at 1031.138 kb on + strand, within SM_b21367 at 1031.138 kb on + strand, within SM_b21367 at 1031.139 kb on - strand, within SM_b21367 at 1031.225 kb on + strand, within SM_b21367 at 1031.225 kb on + strand, within SM_b21367 at 1031.226 kb on - strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.409 kb on + strand, within SM_b21367 at 1031.410 kb on - strand, within SM_b21367 at 1031.410 kb on - strand, within SM_b21367 at 1031.421 kb on + strand, within SM_b21367 at 1031.422 kb on - strand, within SM_b21367 at 1031.460 kb on - strand, within SM_b21367 at 1031.864 kb on - strand, within SM_b21368 at 1031.872 kb on + strand, within SM_b21368 at 1031.872 kb on + strand, within SM_b21368 at 1031.872 kb on + strand, within SM_b21368 at 1031.872 kb on + strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.873 kb on - strand, within SM_b21368 at 1031.877 kb on + strand, within SM_b21368 at 1031.877 kb on + strand, within SM_b21368 at 1031.878 kb on - strand, within SM_b21368 at 1031.878 kb on - strand, within SM_b21368 at 1031.963 kb on - strand, within SM_b21368 at 1031.963 kb on - strand, within SM_b21368 at 1031.963 kb on - strand, within SM_b21368 at 1032.057 kb on + strand, within SM_b21368 at 1032.057 kb on + strand, within SM_b21368 at 1032.058 kb on - strand, within SM_b21368 at 1032.175 kb on + strand, within SM_b21368 at 1032.208 kb on + strand, within SM_b21368 at 1032.366 kb on + strand, within SM_b21368 at 1032.567 kb on + strand at 1032.567 kb on + strand at 1032.567 kb on + strand at 1032.567 kb on + strand at 1032.568 kb on - strand at 1032.568 kb on - strand at 1032.568 kb on - strand at 1032.665 kb on - strand at 1033.146 kb on - strand, within SM_b21369 at 1033.210 kb on + strand at 1033.211 kb on - strand, within SM_b21369 at 1033.348 kb on + strand, within SM_b21369 at 1033.348 kb on + strand, within SM_b21369 at 1033.348 kb on + strand, within SM_b21369 at 1033.348 kb on + strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.349 kb on - strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.350 kb on + strand, within SM_b21369 at 1033.351 kb on - strand, within SM_b21369 at 1033.351 kb on - strand, within SM_b21369 at 1033.351 kb on - strand, within SM_b21369 at 1033.389 kb on - strand, within SM_b21369 at 1033.389 kb on - strand, within SM_b21369 at 1033.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,030,597 + SM_b21367 0.12 +0.1 1,030,726 - SM_b21367 0.24 -0.7 1,030,726 - SM_b21367 0.24 +0.3 1,030,755 + SM_b21367 0.26 -0.3 1,030,756 - SM_b21367 0.26 +0.5 1,030,862 + SM_b21367 0.36 -0.3 1,030,862 + SM_b21367 0.36 -0.3 1,030,862 + SM_b21367 0.36 -0.5 1,030,862 + SM_b21367 0.36 -0.6 1,030,889 - SM_b21367 0.38 -0.6 1,030,889 - SM_b21367 0.38 +0.6 1,030,996 + SM_b21367 0.48 -0.6 1,031,114 + SM_b21367 0.58 -1.1 1,031,114 + SM_b21367 0.58 +0.4 1,031,115 - SM_b21367 0.58 -0.4 1,031,115 - SM_b21367 0.58 +0.4 1,031,138 + SM_b21367 0.60 -0.6 1,031,138 + SM_b21367 0.60 -0.9 1,031,139 - SM_b21367 0.60 +0.1 1,031,225 + SM_b21367 0.68 +0.3 1,031,225 + SM_b21367 0.68 -0.2 1,031,226 - SM_b21367 0.68 -0.3 1,031,409 + SM_b21367 0.84 -0.9 1,031,409 + SM_b21367 0.84 +0.1 1,031,409 + SM_b21367 0.84 +1.1 1,031,409 + SM_b21367 0.84 +0.9 1,031,409 + SM_b21367 0.84 -0.4 1,031,409 + SM_b21367 0.84 -0.2 1,031,410 - SM_b21367 0.84 -0.4 1,031,410 - SM_b21367 0.84 -0.8 1,031,421 + SM_b21367 0.85 -0.8 1,031,422 - SM_b21367 0.86 +0.4 1,031,460 - SM_b21367 0.89 +1.0 1,031,864 - SM_b21368 0.29 -0.6 1,031,872 + SM_b21368 0.30 +0.4 1,031,872 + SM_b21368 0.30 -0.8 1,031,872 + SM_b21368 0.30 -1.9 1,031,872 + SM_b21368 0.30 +0.0 1,031,873 - SM_b21368 0.30 -1.5 1,031,873 - SM_b21368 0.30 +1.5 1,031,873 - SM_b21368 0.30 -0.7 1,031,873 - SM_b21368 0.30 -0.3 1,031,873 - SM_b21368 0.30 -0.3 1,031,873 - SM_b21368 0.30 -0.2 1,031,873 - SM_b21368 0.30 -0.0 1,031,873 - SM_b21368 0.30 +0.5 1,031,877 + SM_b21368 0.30 +1.1 1,031,877 + SM_b21368 0.30 -1.3 1,031,878 - SM_b21368 0.30 +1.1 1,031,878 - SM_b21368 0.30 +0.2 1,031,963 - SM_b21368 0.39 -0.7 1,031,963 - SM_b21368 0.39 -1.5 1,031,963 - SM_b21368 0.39 -0.9 1,032,057 + SM_b21368 0.48 +0.5 1,032,057 + SM_b21368 0.48 -0.2 1,032,058 - SM_b21368 0.48 -1.8 1,032,175 + SM_b21368 0.60 -0.5 1,032,208 + SM_b21368 0.64 -0.5 1,032,366 + SM_b21368 0.80 +0.4 1,032,567 + -0.3 1,032,567 + +0.1 1,032,567 + +0.7 1,032,567 + +0.1 1,032,568 - +0.8 1,032,568 - -0.1 1,032,568 - +0.5 1,032,665 - +0.2 1,033,146 - SM_b21369 0.54 -0.4 1,033,210 + +0.1 1,033,211 - SM_b21369 0.60 +1.4 1,033,348 + SM_b21369 0.73 -0.6 1,033,348 + SM_b21369 0.73 -0.1 1,033,348 + SM_b21369 0.73 -0.7 1,033,348 + SM_b21369 0.73 +0.3 1,033,349 - SM_b21369 0.73 -0.4 1,033,349 - SM_b21369 0.73 -3.1 1,033,349 - SM_b21369 0.73 +0.5 1,033,349 - SM_b21369 0.73 +2.7 1,033,349 - SM_b21369 0.73 -1.6 1,033,350 + SM_b21369 0.73 -0.0 1,033,350 + SM_b21369 0.73 +0.6 1,033,350 + SM_b21369 0.73 +1.8 1,033,350 + SM_b21369 0.73 -0.2 1,033,350 + SM_b21369 0.73 +0.1 1,033,351 - SM_b21369 0.73 -0.5 1,033,351 - SM_b21369 0.73 -0.6 1,033,351 - SM_b21369 0.73 -0.3 1,033,389 - SM_b21369 0.76 -0.9 1,033,389 - SM_b21369 0.76 +0.3 1,033,555 + +0.4
Or see this region's nucleotide sequence