Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21269 and SM_b21270 are separated by 96 nucleotides SM_b21270 and SM_b21271 are separated by 83 nucleotides SM_b21271 and SM_b21272 are separated by 147 nucleotides
SM_b21269: SM_b21269 - ABC transporter ATPase, at 842,345 to 844,435
_b21269
SM_b21270: SM_b21270 - transcriptional regulator, at 844,532 to 844,996
_b21270
SM_b21271: SM_b21271 - nucleotide-binding protein, at 845,080 to 845,829
_b21271
SM_b21272: SM_b21272 - LacI family transcriptional regulator, at 845,977 to 847,047
_b21272
Position (kb)
845
846 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 844.196 kb on + strand, within SM_b21269 at 844.299 kb on + strand at 844.416 kb on - strand at 844.416 kb on - strand at 844.416 kb on - strand at 844.438 kb on + strand at 844.438 kb on + strand at 844.438 kb on + strand at 844.438 kb on + strand at 844.439 kb on - strand at 844.439 kb on - strand at 844.439 kb on - strand at 844.439 kb on - strand at 844.439 kb on - strand at 844.441 kb on + strand at 844.441 kb on + strand at 844.442 kb on - strand at 844.442 kb on - strand at 844.442 kb on - strand at 844.463 kb on + strand at 844.463 kb on + strand at 844.463 kb on + strand at 844.464 kb on - strand at 844.464 kb on - strand at 844.464 kb on - strand at 844.532 kb on - strand at 844.539 kb on + strand at 844.638 kb on - strand, within SM_b21270 at 844.688 kb on + strand, within SM_b21270 at 844.688 kb on + strand, within SM_b21270 at 844.689 kb on - strand, within SM_b21270 at 845.068 kb on + strand at 845.069 kb on - strand at 845.096 kb on - strand at 845.096 kb on - strand at 845.113 kb on + strand at 845.224 kb on + strand, within SM_b21271 at 845.225 kb on - strand, within SM_b21271 at 845.225 kb on - strand, within SM_b21271 at 845.227 kb on - strand, within SM_b21271 at 845.566 kb on + strand, within SM_b21271 at 845.566 kb on + strand, within SM_b21271 at 845.567 kb on - strand, within SM_b21271 at 845.715 kb on - strand, within SM_b21271 at 845.715 kb on - strand, within SM_b21271 at 845.882 kb on + strand at 845.883 kb on - strand at 845.883 kb on - strand at 845.883 kb on - strand at 845.883 kb on - strand at 845.885 kb on + strand at 845.885 kb on + strand at 845.927 kb on + strand at 845.928 kb on - strand at 845.970 kb on + strand at 845.970 kb on + strand at 845.971 kb on - strand at 846.008 kb on + strand at 846.008 kb on + strand at 846.008 kb on + strand at 846.009 kb on - strand at 846.009 kb on - strand at 846.532 kb on - strand, within SM_b21272 at 846.532 kb on - strand, within SM_b21272
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 844,196 + SM_b21269 0.89 +0.6 844,299 + +0.9 844,416 - -0.2 844,416 - -0.4 844,416 - +1.2 844,438 + +1.3 844,438 + +0.7 844,438 + -0.3 844,438 + +1.4 844,439 - -0.4 844,439 - +0.1 844,439 - -0.5 844,439 - -0.3 844,439 - -1.2 844,441 + -0.3 844,441 + +0.0 844,442 - -0.9 844,442 - -1.5 844,442 - -0.3 844,463 + +0.6 844,463 + -0.2 844,463 + -0.4 844,464 - +0.4 844,464 - +0.1 844,464 - -0.1 844,532 - +0.4 844,539 + -0.0 844,638 - SM_b21270 0.23 -0.4 844,688 + SM_b21270 0.34 +2.1 844,688 + SM_b21270 0.34 -0.2 844,689 - SM_b21270 0.34 +0.4 845,068 + -0.0 845,069 - +0.7 845,096 - +1.1 845,096 - +0.2 845,113 + +0.1 845,224 + SM_b21271 0.19 -0.8 845,225 - SM_b21271 0.19 +0.4 845,225 - SM_b21271 0.19 +0.3 845,227 - SM_b21271 0.20 +0.8 845,566 + SM_b21271 0.65 +0.3 845,566 + SM_b21271 0.65 +0.4 845,567 - SM_b21271 0.65 +0.6 845,715 - SM_b21271 0.85 +0.7 845,715 - SM_b21271 0.85 +2.3 845,882 + -0.9 845,883 - -0.6 845,883 - +0.7 845,883 - -0.3 845,883 - -0.0 845,885 + -0.1 845,885 + +0.5 845,927 + -1.9 845,928 - +0.8 845,970 + +0.2 845,970 + -0.6 845,971 - -0.8 846,008 + -0.8 846,008 + -0.6 846,008 + -0.9 846,009 - +0.2 846,009 - -1.1 846,532 - SM_b21272 0.52 +0.4 846,532 - SM_b21272 0.52 -0.2
Or see this region's nucleotide sequence