Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21255 and SM_b21256 overlap by 11 nucleotides SM_b21256 and SM_b21257 are separated by 351 nucleotides
SM_b21255: SM_b21255 - hypothetical protein, at 825,490 to 826,692
_b21255
SM_b21256: SM_b21256 - nucleotide sugar oxidase, at 826,682 to 828,115
_b21256
SM_b21257: SM_b21257 - adenylate cyclase, at 828,467 to 829,486
_b21257
Position (kb) 826
827
828
829 Strain fitness (log2 ratio) -1
0
1
2 at 825.928 kb on + strand, within SM_b21255 at 825.928 kb on + strand, within SM_b21255 at 825.929 kb on - strand, within SM_b21255 at 825.929 kb on - strand, within SM_b21255 at 825.954 kb on - strand, within SM_b21255 at 826.496 kb on + strand, within SM_b21255 at 826.497 kb on - strand, within SM_b21255 at 826.497 kb on - strand, within SM_b21255 at 826.542 kb on + strand, within SM_b21255 at 826.543 kb on - strand, within SM_b21255 at 826.572 kb on + strand at 826.572 kb on + strand at 826.572 kb on + strand at 826.573 kb on - strand at 826.573 kb on - strand at 826.573 kb on - strand at 826.669 kb on - strand at 826.776 kb on + strand at 826.914 kb on + strand, within SM_b21256 at 826.915 kb on - strand, within SM_b21256 at 826.952 kb on + strand, within SM_b21256 at 826.952 kb on + strand, within SM_b21256 at 827.002 kb on - strand, within SM_b21256 at 827.142 kb on - strand, within SM_b21256 at 827.142 kb on - strand, within SM_b21256 at 827.148 kb on + strand, within SM_b21256 at 827.173 kb on - strand, within SM_b21256 at 827.173 kb on - strand, within SM_b21256 at 827.220 kb on + strand, within SM_b21256 at 827.233 kb on - strand, within SM_b21256 at 827.233 kb on - strand, within SM_b21256 at 827.295 kb on + strand, within SM_b21256 at 827.345 kb on - strand, within SM_b21256 at 827.490 kb on + strand, within SM_b21256 at 827.491 kb on - strand, within SM_b21256 at 827.587 kb on + strand, within SM_b21256 at 827.607 kb on + strand, within SM_b21256 at 827.607 kb on + strand, within SM_b21256 at 827.608 kb on - strand, within SM_b21256 at 827.671 kb on + strand, within SM_b21256 at 827.672 kb on - strand, within SM_b21256 at 827.835 kb on + strand, within SM_b21256 at 827.836 kb on - strand, within SM_b21256 at 827.836 kb on - strand, within SM_b21256 at 828.239 kb on + strand at 828.239 kb on + strand at 828.299 kb on + strand at 828.300 kb on - strand at 828.689 kb on - strand, within SM_b21257 at 828.754 kb on + strand, within SM_b21257 at 828.755 kb on + strand, within SM_b21257 at 828.758 kb on + strand, within SM_b21257 at 828.759 kb on - strand, within SM_b21257 at 828.759 kb on - strand, within SM_b21257 at 828.759 kb on - strand, within SM_b21257 at 828.759 kb on - strand, within SM_b21257 at 828.762 kb on - strand, within SM_b21257 at 828.866 kb on + strand, within SM_b21257 at 828.866 kb on + strand, within SM_b21257 at 828.867 kb on - strand, within SM_b21257 at 828.867 kb on - strand, within SM_b21257 at 828.870 kb on + strand, within SM_b21257 at 828.870 kb on + strand, within SM_b21257 at 828.870 kb on + strand, within SM_b21257 at 828.871 kb on - strand, within SM_b21257 at 828.871 kb on - strand, within SM_b21257 at 829.039 kb on + strand, within SM_b21257 at 829.039 kb on + strand, within SM_b21257 at 829.039 kb on + strand, within SM_b21257 at 829.039 kb on + strand, within SM_b21257 at 829.040 kb on - strand, within SM_b21257 at 829.052 kb on + strand, within SM_b21257 at 829.052 kb on + strand, within SM_b21257 at 829.052 kb on + strand, within SM_b21257 at 829.052 kb on + strand, within SM_b21257 at 829.053 kb on - strand, within SM_b21257 at 829.053 kb on - strand, within SM_b21257 at 829.053 kb on - strand, within SM_b21257 at 829.053 kb on - strand, within SM_b21257 at 829.081 kb on - strand, within SM_b21257
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 825,928 + SM_b21255 0.36 +0.5 825,928 + SM_b21255 0.36 +0.7 825,929 - SM_b21255 0.36 -0.3 825,929 - SM_b21255 0.36 -0.7 825,954 - SM_b21255 0.39 +0.6 826,496 + SM_b21255 0.84 -0.9 826,497 - SM_b21255 0.84 -0.5 826,497 - SM_b21255 0.84 +0.4 826,542 + SM_b21255 0.87 +0.0 826,543 - SM_b21255 0.88 +0.6 826,572 + +0.4 826,572 + -0.3 826,572 + -0.5 826,573 - -0.5 826,573 - -0.3 826,573 - +0.1 826,669 - +0.6 826,776 + +1.1 826,914 + SM_b21256 0.16 +0.9 826,915 - SM_b21256 0.16 +1.8 826,952 + SM_b21256 0.19 +0.8 826,952 + SM_b21256 0.19 +0.2 827,002 - SM_b21256 0.22 +1.2 827,142 - SM_b21256 0.32 +1.3 827,142 - SM_b21256 0.32 +1.0 827,148 + SM_b21256 0.32 +1.4 827,173 - SM_b21256 0.34 +1.0 827,173 - SM_b21256 0.34 +1.6 827,220 + SM_b21256 0.38 +0.9 827,233 - SM_b21256 0.38 +1.1 827,233 - SM_b21256 0.38 +1.0 827,295 + SM_b21256 0.43 +0.6 827,345 - SM_b21256 0.46 +0.4 827,490 + SM_b21256 0.56 +1.6 827,491 - SM_b21256 0.56 +1.0 827,587 + SM_b21256 0.63 -0.0 827,607 + SM_b21256 0.65 +1.3 827,607 + SM_b21256 0.65 +0.7 827,608 - SM_b21256 0.65 +1.3 827,671 + SM_b21256 0.69 +1.8 827,672 - SM_b21256 0.69 +0.5 827,835 + SM_b21256 0.80 +1.1 827,836 - SM_b21256 0.80 +1.3 827,836 - SM_b21256 0.80 +1.9 828,239 + -0.3 828,239 + +0.8 828,299 + -0.5 828,300 - -0.5 828,689 - SM_b21257 0.22 -1.3 828,754 + SM_b21257 0.28 +0.3 828,755 + SM_b21257 0.28 +1.7 828,758 + SM_b21257 0.29 -0.0 828,759 - SM_b21257 0.29 +0.1 828,759 - SM_b21257 0.29 -0.1 828,759 - SM_b21257 0.29 +0.6 828,759 - SM_b21257 0.29 -0.2 828,762 - SM_b21257 0.29 +0.3 828,866 + SM_b21257 0.39 -0.2 828,866 + SM_b21257 0.39 +1.1 828,867 - SM_b21257 0.39 -0.3 828,867 - SM_b21257 0.39 +0.5 828,870 + SM_b21257 0.40 +0.1 828,870 + SM_b21257 0.40 +0.1 828,870 + SM_b21257 0.40 -0.2 828,871 - SM_b21257 0.40 +0.3 828,871 - SM_b21257 0.40 -0.2 829,039 + SM_b21257 0.56 -0.6 829,039 + SM_b21257 0.56 +0.1 829,039 + SM_b21257 0.56 -0.0 829,039 + SM_b21257 0.56 +0.4 829,040 - SM_b21257 0.56 +0.2 829,052 + SM_b21257 0.57 +0.4 829,052 + SM_b21257 0.57 +0.5 829,052 + SM_b21257 0.57 -0.7 829,052 + SM_b21257 0.57 -0.2 829,053 - SM_b21257 0.57 -0.6 829,053 - SM_b21257 0.57 +0.5 829,053 - SM_b21257 0.57 +0.5 829,053 - SM_b21257 0.57 -0.9 829,081 - SM_b21257 0.60 -0.6
Or see this region's nucleotide sequence