Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21241

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21240 and SM_b21241 are separated by 313 nucleotidesSM_b21241 and SM_b21242 are separated by 35 nucleotides SM_b21240: SM_b21240 - MPA1 family protein, at 805,755 to 807,743 _b21240 SM_b21241: SM_b21241 - hypothetical protein, at 808,057 to 809,349 _b21241 SM_b21242: SM_b21242 - glycosyltransferase, at 809,385 to 810,509 _b21242 Position (kb) 808 809 810Strain fitness (log2 ratio) -2 -1 0 1at 807.097 kb on + strandat 807.097 kb on + strand, within SM_b21240at 807.097 kb on + strand, within SM_b21240at 807.098 kb on - strand, within SM_b21240at 807.154 kb on - strand, within SM_b21240at 807.349 kb on + strand, within SM_b21240at 807.350 kb on - strand, within SM_b21240at 807.530 kb on + strand, within SM_b21240at 807.530 kb on + strand, within SM_b21240at 807.537 kb on - strand, within SM_b21240at 807.537 kb on - strand, within SM_b21240at 807.539 kb on - strand, within SM_b21240at 807.714 kb on + strandat 807.755 kb on - strandat 807.818 kb on - strandat 807.912 kb on - strandat 807.914 kb on + strandat 807.914 kb on + strandat 807.914 kb on + strandat 807.914 kb on + strandat 807.915 kb on - strandat 807.963 kb on + strandat 808.101 kb on + strandat 808.101 kb on + strandat 808.108 kb on + strandat 808.151 kb on + strandat 808.151 kb on + strandat 808.152 kb on - strandat 808.152 kb on - strandat 808.152 kb on - strandat 808.152 kb on - strandat 808.155 kb on + strandat 808.155 kb on + strandat 808.155 kb on + strandat 808.156 kb on - strandat 808.156 kb on - strandat 808.156 kb on - strandat 808.156 kb on - strandat 808.156 kb on - strandat 808.156 kb on - strandat 808.331 kb on + strand, within SM_b21241at 808.331 kb on + strand, within SM_b21241at 808.331 kb on + strand, within SM_b21241at 808.332 kb on - strand, within SM_b21241at 808.335 kb on + strand, within SM_b21241at 808.336 kb on - strand, within SM_b21241at 808.421 kb on - strand, within SM_b21241at 808.422 kb on + strand, within SM_b21241at 808.422 kb on + strand, within SM_b21241at 808.422 kb on + strand, within SM_b21241at 808.422 kb on + strand, within SM_b21241at 808.423 kb on - strand, within SM_b21241at 808.423 kb on - strand, within SM_b21241at 808.423 kb on - strand, within SM_b21241at 808.423 kb on - strandat 808.423 kb on - strand, within SM_b21241at 808.477 kb on + strand, within SM_b21241at 808.477 kb on + strand, within SM_b21241at 808.539 kb on + strand, within SM_b21241at 808.540 kb on - strand, within SM_b21241at 808.549 kb on + strand, within SM_b21241at 808.643 kb on - strand, within SM_b21241at 808.773 kb on + strand, within SM_b21241at 808.773 kb on + strand, within SM_b21241at 808.774 kb on - strand, within SM_b21241at 808.774 kb on - strand, within SM_b21241at 808.783 kb on + strand, within SM_b21241at 808.784 kb on - strand, within SM_b21241at 808.784 kb on - strand, within SM_b21241at 808.851 kb on + strand, within SM_b21241at 808.851 kb on + strand, within SM_b21241at 808.852 kb on - strand, within SM_b21241at 808.852 kb on - strand, within SM_b21241at 808.852 kb on - strand, within SM_b21241at 808.852 kb on - strand, within SM_b21241at 808.878 kb on + strand, within SM_b21241at 808.878 kb on + strand, within SM_b21241at 808.880 kb on + strand, within SM_b21241at 808.880 kb on + strand, within SM_b21241at 808.880 kb on + strand, within SM_b21241at 808.880 kb on + strand, within SM_b21241at 808.880 kb on + strand, within SM_b21241at 808.881 kb on - strand, within SM_b21241at 808.881 kb on - strand, within SM_b21241at 808.881 kb on - strand, within SM_b21241at 808.881 kb on - strand, within SM_b21241at 808.881 kb on - strand, within SM_b21241at 808.893 kb on + strand, within SM_b21241at 808.995 kb on - strand, within SM_b21241at 808.995 kb on - strand, within SM_b21241at 808.995 kb on - strand, within SM_b21241at 809.006 kb on + strand, within SM_b21241at 809.006 kb on + strand, within SM_b21241at 809.006 kb on + strand, within SM_b21241at 809.007 kb on - strand, within SM_b21241at 809.007 kb on - strand, within SM_b21241at 809.101 kb on + strand, within SM_b21241at 809.366 kb on + strandat 809.367 kb on - strandat 809.370 kb on + strandat 809.450 kb on + strandat 809.450 kb on + strandat 809.450 kb on + strandat 809.451 kb on - strandat 809.721 kb on + strand, within SM_b21242

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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807,097 + +1.6
807,097 + SM_b21240 0.67 -0.3
807,097 + SM_b21240 0.67 +0.3
807,098 - SM_b21240 0.68 -0.2
807,154 - SM_b21240 0.70 +0.3
807,349 + SM_b21240 0.80 -0.6
807,350 - SM_b21240 0.80 +0.3
807,530 + SM_b21240 0.89 -1.2
807,530 + SM_b21240 0.89 +0.1
807,537 - SM_b21240 0.90 -0.7
807,537 - SM_b21240 0.90 -1.7
807,539 - SM_b21240 0.90 +0.7
807,714 + -1.6
807,755 - -2.0
807,818 - +0.2
807,912 - +0.0
807,914 + +0.2
807,914 + +0.8
807,914 + +0.8
807,914 + +1.0
807,915 - -0.0
807,963 + -0.8
808,101 + +1.5
808,101 + +0.0
808,108 + -0.0
808,151 + +0.7
808,151 + -0.4
808,152 - +1.1
808,152 - -0.7
808,152 - +0.7
808,152 - -0.2
808,155 + -0.5
808,155 + +0.5
808,155 + -0.3
808,156 - +0.7
808,156 - +0.3
808,156 - +0.9
808,156 - -0.4
808,156 - +0.6
808,156 - -0.6
808,331 + SM_b21241 0.21 -0.7
808,331 + SM_b21241 0.21 +0.5
808,331 + SM_b21241 0.21 +1.3
808,332 - SM_b21241 0.21 -0.5
808,335 + SM_b21241 0.22 -0.7
808,336 - SM_b21241 0.22 -0.1
808,421 - SM_b21241 0.28 +0.4
808,422 + SM_b21241 0.28 +1.0
808,422 + SM_b21241 0.28 -1.6
808,422 + SM_b21241 0.28 +0.9
808,422 + SM_b21241 0.28 -1.4
808,423 - SM_b21241 0.28 +0.2
808,423 - SM_b21241 0.28 +1.1
808,423 - SM_b21241 0.28 -1.3
808,423 - +0.7
808,423 - SM_b21241 0.28 -0.3
808,477 + SM_b21241 0.32 +0.1
808,477 + SM_b21241 0.32 -0.8
808,539 + SM_b21241 0.37 +0.4
808,540 - SM_b21241 0.37 -0.5
808,549 + SM_b21241 0.38 +1.1
808,643 - SM_b21241 0.45 +0.1
808,773 + SM_b21241 0.55 -0.3
808,773 + SM_b21241 0.55 -0.3
808,774 - SM_b21241 0.55 -0.3
808,774 - SM_b21241 0.55 +0.6
808,783 + SM_b21241 0.56 +0.5
808,784 - SM_b21241 0.56 +0.5
808,784 - SM_b21241 0.56 -0.0
808,851 + SM_b21241 0.61 -2.2
808,851 + SM_b21241 0.61 -0.7
808,852 - SM_b21241 0.61 -0.0
808,852 - SM_b21241 0.61 -0.2
808,852 - SM_b21241 0.61 +0.1
808,852 - SM_b21241 0.61 +0.6
808,878 + SM_b21241 0.63 +1.4
808,878 + SM_b21241 0.63 +0.1
808,880 + SM_b21241 0.64 -0.9
808,880 + SM_b21241 0.64 -0.1
808,880 + SM_b21241 0.64 +1.3
808,880 + SM_b21241 0.64 +0.0
808,880 + SM_b21241 0.64 -0.8
808,881 - SM_b21241 0.64 +0.2
808,881 - SM_b21241 0.64 +0.6
808,881 - SM_b21241 0.64 -1.1
808,881 - SM_b21241 0.64 +0.7
808,881 - SM_b21241 0.64 +0.8
808,893 + SM_b21241 0.65 +0.3
808,995 - SM_b21241 0.73 +0.1
808,995 - SM_b21241 0.73 +1.0
808,995 - SM_b21241 0.73 +0.3
809,006 + SM_b21241 0.73 -0.4
809,006 + SM_b21241 0.73 -0.3
809,006 + SM_b21241 0.73 +0.4
809,007 - SM_b21241 0.73 +0.3
809,007 - SM_b21241 0.73 +0.5
809,101 + SM_b21241 0.81 -0.1
809,366 + -0.3
809,367 - -0.3
809,370 + -0.4
809,450 + -0.3
809,450 + -0.2
809,450 + -0.5
809,451 - -0.5
809,721 + SM_b21242 0.30 +0.3

Or see this region's nucleotide sequence