Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21226 and SM_b21227 overlap by 4 nucleotides SM_b21227 and SM_b21228 are separated by 5 nucleotides SM_b21228 and SM_b21229 are separated by 85 nucleotides
SM_b21226: SM_b21226 - hypothetical protein, at 790,320 to 791,060
_b21226
SM_b21227: SM_b21227 - carbamoyl phosphate synthase-like protein, at 791,057 to 792,049
_b21227
SM_b21228: SM_b21228 - nucleotide sugar epimerase dehydratase, at 792,055 to 792,990
_b21228
SM_b21229: SM_b21229 - calcium-binding exported protein, at 793,076 to 794,239
_b21229
Position (kb) 792
793 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 791.068 kb on + strand at 791.068 kb on + strand at 791.069 kb on - strand at 791.143 kb on - strand at 791.180 kb on + strand, within SM_b21227 at 791.198 kb on + strand, within SM_b21227 at 791.199 kb on - strand, within SM_b21227 at 791.229 kb on - strand, within SM_b21227 at 791.342 kb on + strand, within SM_b21227 at 791.343 kb on - strand at 791.439 kb on - strand, within SM_b21227 at 791.633 kb on + strand, within SM_b21227 at 791.633 kb on + strand, within SM_b21227 at 791.710 kb on + strand, within SM_b21227 at 791.710 kb on + strand, within SM_b21227 at 791.711 kb on - strand, within SM_b21227 at 791.714 kb on + strand, within SM_b21227 at 791.714 kb on + strand, within SM_b21227 at 791.715 kb on - strand, within SM_b21227 at 791.715 kb on - strand, within SM_b21227 at 791.786 kb on + strand, within SM_b21227 at 791.787 kb on - strand, within SM_b21227 at 791.787 kb on - strand, within SM_b21227 at 791.970 kb on + strand at 791.971 kb on - strand at 791.971 kb on - strand at 792.127 kb on + strand at 792.128 kb on - strand at 792.266 kb on - strand, within SM_b21228 at 792.404 kb on - strand, within SM_b21228 at 792.404 kb on - strand, within SM_b21228 at 792.404 kb on - strand, within SM_b21228 at 792.466 kb on + strand, within SM_b21228 at 792.467 kb on - strand, within SM_b21228 at 792.467 kb on - strand, within SM_b21228 at 792.467 kb on - strand, within SM_b21228 at 792.470 kb on - strand, within SM_b21228 at 792.562 kb on + strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.563 kb on - strand, within SM_b21228 at 792.655 kb on + strand, within SM_b21228 at 792.655 kb on + strand, within SM_b21228 at 792.668 kb on + strand, within SM_b21228 at 792.668 kb on + strand, within SM_b21228 at 792.673 kb on + strand, within SM_b21228 at 792.674 kb on - strand, within SM_b21228 at 792.731 kb on + strand, within SM_b21228 at 792.901 kb on + strand at 792.988 kb on + strand at 792.988 kb on + strand at 792.988 kb on + strand at 792.989 kb on - strand at 793.039 kb on + strand at 793.181 kb on + strand at 793.209 kb on + strand, within SM_b21229 at 793.215 kb on + strand, within SM_b21229 at 793.215 kb on + strand, within SM_b21229 at 793.245 kb on + strand, within SM_b21229 at 793.246 kb on - strand, within SM_b21229 at 793.252 kb on + strand, within SM_b21229 at 793.253 kb on - strand, within SM_b21229 at 793.268 kb on + strand, within SM_b21229 at 793.268 kb on + strand, within SM_b21229 at 793.300 kb on - strand, within SM_b21229 at 793.374 kb on - strand, within SM_b21229 at 793.464 kb on + strand, within SM_b21229 at 793.464 kb on + strand, within SM_b21229 at 793.464 kb on + strand, within SM_b21229 at 793.465 kb on - strand, within SM_b21229 at 793.465 kb on - strand, within SM_b21229 at 793.465 kb on - strand, within SM_b21229 at 793.648 kb on - strand, within SM_b21229 at 793.749 kb on + strand, within SM_b21229 at 793.749 kb on + strand, within SM_b21229 at 793.750 kb on - strand, within SM_b21229 at 793.750 kb on - strand, within SM_b21229 at 793.750 kb on - strand, within SM_b21229 at 793.750 kb on - strand, within SM_b21229 at 793.751 kb on + strand, within SM_b21229 at 793.751 kb on + strand, within SM_b21229 at 793.752 kb on - strand, within SM_b21229 at 793.752 kb on - strand, within SM_b21229 at 793.814 kb on + strand, within SM_b21229 at 793.851 kb on + strand, within SM_b21229 at 793.882 kb on + strand, within SM_b21229 at 793.882 kb on + strand, within SM_b21229 at 793.883 kb on - strand, within SM_b21229 at 793.883 kb on - strand, within SM_b21229 at 793.884 kb on + strand, within SM_b21229 at 793.884 kb on + strand, within SM_b21229 at 793.884 kb on + strand, within SM_b21229 at 793.884 kb on + strand, within SM_b21229 at 793.885 kb on - strand, within SM_b21229 at 793.885 kb on - strand, within SM_b21229 at 793.988 kb on + strand, within SM_b21229 at 793.988 kb on + strand, within SM_b21229 at 793.988 kb on + strand, within SM_b21229
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 791,068 + -0.5 791,068 + -0.4 791,069 - -0.9 791,143 - -0.2 791,180 + SM_b21227 0.12 +1.8 791,198 + SM_b21227 0.14 -0.6 791,199 - SM_b21227 0.14 -0.4 791,229 - SM_b21227 0.17 +0.3 791,342 + SM_b21227 0.29 +0.6 791,343 - +0.1 791,439 - SM_b21227 0.38 +0.6 791,633 + SM_b21227 0.58 -0.6 791,633 + SM_b21227 0.58 +0.1 791,710 + SM_b21227 0.66 +0.3 791,710 + SM_b21227 0.66 +1.2 791,711 - SM_b21227 0.66 -0.1 791,714 + SM_b21227 0.66 +0.2 791,714 + SM_b21227 0.66 -0.6 791,715 - SM_b21227 0.66 +0.3 791,715 - SM_b21227 0.66 -0.4 791,786 + SM_b21227 0.73 +0.5 791,787 - SM_b21227 0.74 -0.1 791,787 - SM_b21227 0.74 +1.3 791,970 + -1.5 791,971 - +0.2 791,971 - +0.1 792,127 + +0.2 792,128 - +0.9 792,266 - SM_b21228 0.23 +0.1 792,404 - SM_b21228 0.37 +0.7 792,404 - SM_b21228 0.37 +2.1 792,404 - SM_b21228 0.37 +1.5 792,466 + SM_b21228 0.44 -0.2 792,467 - SM_b21228 0.44 -0.4 792,467 - SM_b21228 0.44 -0.9 792,467 - SM_b21228 0.44 +0.2 792,470 - SM_b21228 0.44 -0.1 792,562 + SM_b21228 0.54 -2.2 792,563 - SM_b21228 0.54 +0.8 792,563 - SM_b21228 0.54 +0.3 792,563 - SM_b21228 0.54 -0.1 792,563 - SM_b21228 0.54 +0.1 792,563 - SM_b21228 0.54 +0.4 792,655 + SM_b21228 0.64 +0.2 792,655 + SM_b21228 0.64 +1.9 792,668 + SM_b21228 0.65 +0.9 792,668 + SM_b21228 0.65 +0.2 792,673 + SM_b21228 0.66 -0.3 792,674 - SM_b21228 0.66 +0.1 792,731 + SM_b21228 0.72 -0.5 792,901 + -0.1 792,988 + -1.8 792,988 + -0.6 792,988 + +0.2 792,989 - -0.3 793,039 + -0.7 793,181 + +0.3 793,209 + SM_b21229 0.11 -0.4 793,215 + SM_b21229 0.12 +0.9 793,215 + SM_b21229 0.12 +0.4 793,245 + SM_b21229 0.15 +0.5 793,246 - SM_b21229 0.15 -0.3 793,252 + SM_b21229 0.15 -0.7 793,253 - SM_b21229 0.15 +0.1 793,268 + SM_b21229 0.16 +0.1 793,268 + SM_b21229 0.16 -0.1 793,300 - SM_b21229 0.19 +0.4 793,374 - SM_b21229 0.26 -0.3 793,464 + SM_b21229 0.33 -0.0 793,464 + SM_b21229 0.33 +0.1 793,464 + SM_b21229 0.33 -0.5 793,465 - SM_b21229 0.33 -0.3 793,465 - SM_b21229 0.33 -0.2 793,465 - SM_b21229 0.33 -0.1 793,648 - SM_b21229 0.49 -0.5 793,749 + SM_b21229 0.58 +0.6 793,749 + SM_b21229 0.58 -0.1 793,750 - SM_b21229 0.58 -0.7 793,750 - SM_b21229 0.58 +0.5 793,750 - SM_b21229 0.58 +0.8 793,750 - SM_b21229 0.58 -0.1 793,751 + SM_b21229 0.58 +0.2 793,751 + SM_b21229 0.58 -0.1 793,752 - SM_b21229 0.58 +0.5 793,752 - SM_b21229 0.58 +0.2 793,814 + SM_b21229 0.63 -0.8 793,851 + SM_b21229 0.67 +0.1 793,882 + SM_b21229 0.69 +0.1 793,882 + SM_b21229 0.69 -0.9 793,883 - SM_b21229 0.69 +0.8 793,883 - SM_b21229 0.69 +0.2 793,884 + SM_b21229 0.69 +0.7 793,884 + SM_b21229 0.69 +4.0 793,884 + SM_b21229 0.69 +0.3 793,884 + SM_b21229 0.69 -0.0 793,885 - SM_b21229 0.70 -1.5 793,885 - SM_b21229 0.70 -0.4 793,988 + SM_b21229 0.78 +0.7 793,988 + SM_b21229 0.78 +0.2 793,988 + SM_b21229 0.78 +0.8
Or see this region's nucleotide sequence