Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21204 and SM_b21205 are separated by 1 nucleotides SM_b21205 and SM_b21206 overlap by 4 nucleotides
SM_b21204: SM_b21204 - ABC transporter permease, at 955,955 to 957,067
_b21204
SM_b21205: SM_b21205 - ABC transporter permease, at 957,069 to 958,223
_b21205
SM_b21206: SM_b21206 - ABC transporter ATP-binding protein, at 958,220 to 959,968
_b21206
Position (kb) 957
958
959 Strain fitness (log2 ratio) -1
0
1
2 at 956.094 kb on + strand, within SM_b21204 at 956.095 kb on - strand, within SM_b21204 at 956.274 kb on + strand, within SM_b21204 at 956.350 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.352 kb on + strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.353 kb on - strand, within SM_b21204 at 956.551 kb on - strand, within SM_b21204 at 956.551 kb on - strand, within SM_b21204 at 956.771 kb on + strand, within SM_b21204 at 956.835 kb on - strand, within SM_b21204 at 956.949 kb on + strand, within SM_b21204 at 957.202 kb on - strand, within SM_b21205 at 957.208 kb on + strand, within SM_b21205 at 957.209 kb on - strand, within SM_b21205 at 957.226 kb on + strand, within SM_b21205 at 957.226 kb on + strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.227 kb on - strand, within SM_b21205 at 957.409 kb on + strand, within SM_b21205 at 957.410 kb on - strand, within SM_b21205 at 957.502 kb on + strand, within SM_b21205 at 957.778 kb on + strand, within SM_b21205 at 957.779 kb on - strand, within SM_b21205 at 958.192 kb on + strand at 958.193 kb on - strand at 958.357 kb on - strand at 958.359 kb on - strand at 958.447 kb on + strand, within SM_b21206 at 958.666 kb on - strand, within SM_b21206 at 958.666 kb on - strand, within SM_b21206 at 958.713 kb on + strand, within SM_b21206 at 958.713 kb on + strand, within SM_b21206 at 958.714 kb on - strand, within SM_b21206 at 958.737 kb on + strand, within SM_b21206 at 958.737 kb on + strand, within SM_b21206 at 958.737 kb on + strand, within SM_b21206 at 958.737 kb on + strand, within SM_b21206 at 958.738 kb on - strand, within SM_b21206 at 958.738 kb on - strand, within SM_b21206 at 958.742 kb on + strand, within SM_b21206 at 958.900 kb on + strand, within SM_b21206 at 959.047 kb on + strand, within SM_b21206
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 956,094 + SM_b21204 0.12 -0.3 956,095 - SM_b21204 0.13 -0.1 956,274 + SM_b21204 0.29 -0.4 956,350 + SM_b21204 0.35 -0.1 956,352 + SM_b21204 0.36 -0.0 956,352 + SM_b21204 0.36 -0.2 956,352 + SM_b21204 0.36 -0.2 956,352 + SM_b21204 0.36 +1.1 956,352 + SM_b21204 0.36 +0.4 956,352 + SM_b21204 0.36 -0.0 956,353 - SM_b21204 0.36 -0.5 956,353 - SM_b21204 0.36 -0.5 956,353 - SM_b21204 0.36 -0.7 956,551 - SM_b21204 0.54 -1.2 956,551 - SM_b21204 0.54 +1.5 956,771 + SM_b21204 0.73 +0.9 956,835 - SM_b21204 0.79 -0.1 956,949 + SM_b21204 0.89 +0.2 957,202 - SM_b21205 0.12 +0.2 957,208 + SM_b21205 0.12 +2.0 957,209 - SM_b21205 0.12 -0.2 957,226 + SM_b21205 0.14 -0.3 957,226 + SM_b21205 0.14 +0.1 957,227 - SM_b21205 0.14 +1.3 957,227 - SM_b21205 0.14 +0.7 957,227 - SM_b21205 0.14 +0.6 957,227 - SM_b21205 0.14 +0.1 957,409 + SM_b21205 0.29 -1.2 957,410 - SM_b21205 0.30 +0.4 957,502 + SM_b21205 0.37 +0.4 957,778 + SM_b21205 0.61 +0.5 957,779 - SM_b21205 0.61 +0.1 958,192 + -0.2 958,193 - -0.0 958,357 - -0.4 958,359 - +0.2 958,447 + SM_b21206 0.13 -0.4 958,666 - SM_b21206 0.26 -0.1 958,666 - SM_b21206 0.26 +0.3 958,713 + SM_b21206 0.28 +2.3 958,713 + SM_b21206 0.28 +0.1 958,714 - SM_b21206 0.28 +0.5 958,737 + SM_b21206 0.30 -0.4 958,737 + SM_b21206 0.30 +0.0 958,737 + SM_b21206 0.30 -0.3 958,737 + SM_b21206 0.30 -0.4 958,738 - SM_b21206 0.30 -0.1 958,738 - SM_b21206 0.30 +0.2 958,742 + SM_b21206 0.30 +1.2 958,900 + SM_b21206 0.39 -1.2 959,047 + SM_b21206 0.47 -1.0
Or see this region's nucleotide sequence