Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21190 and SM_b21191 are separated by 9 nucleotides SM_b21191 and SM_b21192 are separated by 225 nucleotides
SM_b21190: SM_b21190 - glycosyltransferase, at 940,264 to 941,301
_b21190
SM_b21191: SM_b21191 - surface saccharide ABC transporter ATP-binding/membrane spanning protein, at 941,311 to 943,104
_b21191
SM_b21192: SM_b21192 - fructose-1,6-bisphosphate aldolase, at 943,330 to 944,373
_b21192
Position (kb) 941
942
943
944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 940.590 kb on + strand, within SM_b21190 at 940.590 kb on + strand, within SM_b21190 at 940.591 kb on - strand, within SM_b21190 at 940.660 kb on + strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.917 kb on + strand, within SM_b21190 at 940.917 kb on + strand, within SM_b21190 at 940.925 kb on - strand, within SM_b21190 at 940.963 kb on + strand, within SM_b21190 at 940.963 kb on + strand, within SM_b21190 at 941.039 kb on - strand, within SM_b21190 at 941.202 kb on + strand at 941.203 kb on - strand at 941.520 kb on - strand, within SM_b21191 at 941.636 kb on - strand, within SM_b21191 at 941.636 kb on - strand, within SM_b21191 at 941.685 kb on - strand, within SM_b21191 at 941.793 kb on + strand, within SM_b21191 at 942.217 kb on + strand, within SM_b21191 at 942.217 kb on + strand, within SM_b21191 at 942.234 kb on + strand, within SM_b21191 at 942.670 kb on + strand, within SM_b21191 at 942.671 kb on - strand, within SM_b21191 at 942.758 kb on - strand, within SM_b21191 at 943.069 kb on + strand at 943.497 kb on + strand, within SM_b21192 at 943.548 kb on + strand, within SM_b21192 at 943.632 kb on - strand, within SM_b21192 at 943.772 kb on + strand, within SM_b21192 at 943.773 kb on - strand, within SM_b21192 at 943.773 kb on - strand, within SM_b21192 at 944.013 kb on + strand, within SM_b21192 at 944.013 kb on + strand, within SM_b21192 at 944.014 kb on - strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.015 kb on + strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192 at 944.016 kb on - strand, within SM_b21192
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 940,590 + SM_b21190 0.31 +0.1 940,590 + SM_b21190 0.31 -0.2 940,591 - SM_b21190 0.32 +1.6 940,660 + SM_b21190 0.38 -0.2 940,661 - SM_b21190 0.38 +0.3 940,661 - SM_b21190 0.38 +0.2 940,661 - SM_b21190 0.38 +0.8 940,661 - SM_b21190 0.38 +0.4 940,917 + SM_b21190 0.63 +0.1 940,917 + SM_b21190 0.63 +0.1 940,925 - SM_b21190 0.64 -0.3 940,963 + SM_b21190 0.67 -0.4 940,963 + SM_b21190 0.67 -0.1 941,039 - SM_b21190 0.75 +0.0 941,202 + +0.6 941,203 - -0.4 941,520 - SM_b21191 0.12 -0.2 941,636 - SM_b21191 0.18 -1.1 941,636 - SM_b21191 0.18 +0.6 941,685 - SM_b21191 0.21 -0.9 941,793 + SM_b21191 0.27 -3.3 942,217 + SM_b21191 0.51 -0.8 942,217 + SM_b21191 0.51 -0.2 942,234 + SM_b21191 0.51 -1.0 942,670 + SM_b21191 0.76 -0.7 942,671 - SM_b21191 0.76 -0.9 942,758 - SM_b21191 0.81 -0.8 943,069 + -1.3 943,497 + SM_b21192 0.16 +1.6 943,548 + SM_b21192 0.21 +1.8 943,632 - SM_b21192 0.29 +1.8 943,772 + SM_b21192 0.42 +1.1 943,773 - SM_b21192 0.42 +0.8 943,773 - SM_b21192 0.42 +1.7 944,013 + SM_b21192 0.65 +2.2 944,013 + SM_b21192 0.65 +2.0 944,014 - SM_b21192 0.66 +1.6 944,015 + SM_b21192 0.66 +0.9 944,015 + SM_b21192 0.66 +1.3 944,015 + SM_b21192 0.66 +2.3 944,015 + SM_b21192 0.66 +1.6 944,016 - SM_b21192 0.66 +1.1 944,016 - SM_b21192 0.66 +1.4 944,016 - SM_b21192 0.66 +1.5 944,016 - SM_b21192 0.66 +1.7 944,016 - SM_b21192 0.66 +1.5 944,016 - SM_b21192 0.66 +1.3
Or see this region's nucleotide sequence