Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21180 and SM_b21181 are separated by 187 nucleotides SM_b21181 and SM_b21182 are separated by 11 nucleotides
SM_b21180: SM_b21180 - LysR family transcriptional regulator, at 926,839 to 927,792
_b21180
SM_b21181: SM_b21181 - glutaryl-CoA dehydrogenase, at 927,980 to 929,167
_b21181
SM_b21182: SM_b21182 - hypothetical protein, at 929,179 to 930,363
_b21182
Position (kb) 927
928
929
930 Strain fitness (log2 ratio) -1
0
1
2
3 at 927.188 kb on + strand, within SM_b21180 at 927.188 kb on + strand, within SM_b21180 at 927.189 kb on - strand, within SM_b21180 at 927.257 kb on + strand, within SM_b21180 at 927.257 kb on + strand, within SM_b21180 at 927.308 kb on - strand, within SM_b21180 at 927.815 kb on + strand at 927.816 kb on - strand at 927.820 kb on + strand at 927.821 kb on - strand at 927.827 kb on - strand at 927.975 kb on + strand at 927.975 kb on + strand at 927.976 kb on - strand at 927.976 kb on - strand at 927.976 kb on - strand at 928.077 kb on - strand at 928.077 kb on - strand at 928.196 kb on + strand, within SM_b21181 at 928.196 kb on + strand, within SM_b21181 at 928.196 kb on + strand, within SM_b21181 at 928.197 kb on - strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.217 kb on + strand, within SM_b21181 at 928.227 kb on - strand, within SM_b21181 at 928.307 kb on + strand, within SM_b21181 at 928.349 kb on + strand, within SM_b21181 at 928.515 kb on + strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.516 kb on - strand, within SM_b21181 at 928.653 kb on + strand, within SM_b21181 at 929.096 kb on + strand at 929.096 kb on + strand at 929.369 kb on - strand, within SM_b21182 at 929.506 kb on + strand, within SM_b21182 at 929.519 kb on - strand, within SM_b21182 at 929.554 kb on + strand, within SM_b21182 at 929.554 kb on + strand, within SM_b21182 at 929.554 kb on + strand, within SM_b21182 at 929.555 kb on - strand, within SM_b21182 at 929.591 kb on - strand, within SM_b21182 at 929.591 kb on - strand, within SM_b21182 at 929.614 kb on + strand, within SM_b21182 at 929.614 kb on + strand, within SM_b21182 at 929.614 kb on + strand, within SM_b21182 at 929.700 kb on + strand, within SM_b21182 at 929.701 kb on - strand, within SM_b21182 at 929.887 kb on - strand, within SM_b21182 at 930.083 kb on - strand, within SM_b21182 at 930.159 kb on - strand, within SM_b21182
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 927,188 + SM_b21180 0.37 -1.5 927,188 + SM_b21180 0.37 +0.4 927,189 - SM_b21180 0.37 -0.6 927,257 + SM_b21180 0.44 +0.6 927,257 + SM_b21180 0.44 -0.5 927,308 - SM_b21180 0.49 -0.0 927,815 + +0.6 927,816 - -1.5 927,820 + +0.0 927,821 - +1.2 927,827 - -1.1 927,975 + +1.6 927,975 + +1.5 927,976 - +1.0 927,976 - +0.7 927,976 - +0.9 928,077 - +0.9 928,077 - +1.0 928,196 + SM_b21181 0.18 +1.2 928,196 + SM_b21181 0.18 +1.0 928,196 + SM_b21181 0.18 +1.0 928,197 - SM_b21181 0.18 +1.2 928,217 + SM_b21181 0.20 +1.3 928,217 + SM_b21181 0.20 +2.7 928,217 + SM_b21181 0.20 +1.5 928,227 - SM_b21181 0.21 +1.4 928,307 + SM_b21181 0.28 +3.3 928,349 + SM_b21181 0.31 +1.1 928,515 + SM_b21181 0.45 +2.7 928,516 - SM_b21181 0.45 +1.5 928,516 - SM_b21181 0.45 +0.9 928,516 - SM_b21181 0.45 +0.7 928,653 + SM_b21181 0.57 +2.1 929,096 + +2.6 929,096 + +0.0 929,369 - SM_b21182 0.16 +0.3 929,506 + SM_b21182 0.28 +0.9 929,519 - SM_b21182 0.29 +0.9 929,554 + SM_b21182 0.32 +0.0 929,554 + SM_b21182 0.32 +1.5 929,554 + SM_b21182 0.32 +0.5 929,555 - SM_b21182 0.32 +1.2 929,591 - SM_b21182 0.35 +1.5 929,591 - SM_b21182 0.35 +1.2 929,614 + SM_b21182 0.37 +2.2 929,614 + SM_b21182 0.37 +0.9 929,614 + SM_b21182 0.37 +1.1 929,700 + SM_b21182 0.44 +0.2 929,701 - SM_b21182 0.44 +0.2 929,887 - SM_b21182 0.60 +3.2 930,083 - SM_b21182 0.76 +0.9 930,159 - SM_b21182 0.83 +1.1
Or see this region's nucleotide sequence