Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21114 and SM_b21115 are separated by 25 nucleotides SM_b21115 and SM_b21116 are separated by 213 nucleotides SM_b21116 and SM_b21117 are separated by 83 nucleotides SM_b21117 and SM_b21119 are separated by 250 nucleotides
SM_b21114: SM_b21114 - nitrate transport protein, at 755,267 to 756,592
_b21114
SM_b21115: SM_b21115 - response regulator protein, at 756,618 to 757,106
_b21115
SM_b21116: SM_b21116 - trifolitoxin biosynthesis protein, at 757,320 to 758,051
_b21116
SM_b21117: SM_b21117 - transcriptional regulator, at 758,135 to 758,593
_b21117
SM_b21119: SM_b21119 - gluconokinase, at 758,844 to 759,380
_b21119
Position (kb) 757
758
759 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 756.569 kb on + strand at 756.569 kb on + strand at 756.569 kb on + strand at 756.569 kb on + strand at 756.753 kb on - strand, within SM_b21115 at 757.041 kb on + strand, within SM_b21115 at 757.041 kb on + strand, within SM_b21115 at 757.151 kb on + strand at 757.151 kb on + strand at 757.152 kb on - strand at 757.214 kb on - strand at 757.567 kb on + strand, within SM_b21116 at 757.567 kb on + strand, within SM_b21116 at 757.567 kb on + strand, within SM_b21116 at 757.749 kb on + strand, within SM_b21116 at 757.749 kb on + strand, within SM_b21116 at 757.749 kb on + strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.750 kb on - strand, within SM_b21116 at 757.753 kb on + strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.754 kb on - strand, within SM_b21116 at 757.812 kb on + strand, within SM_b21116 at 758.118 kb on + strand at 758.118 kb on + strand at 758.118 kb on + strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.405 kb on + strand, within SM_b21117 at 758.405 kb on + strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.522 kb on + strand, within SM_b21117 at 758.522 kb on + strand, within SM_b21117 at 758.522 kb on + strand, within SM_b21117 at 758.523 kb on - strand, within SM_b21117 at 758.523 kb on - strand, within SM_b21117 at 758.576 kb on - strand at 758.598 kb on + strand at 758.599 kb on - strand at 758.599 kb on - strand at 758.625 kb on + strand at 758.625 kb on + strand at 758.626 kb on - strand at 758.632 kb on + strand at 758.634 kb on + strand at 758.634 kb on + strand at 758.635 kb on - strand at 758.706 kb on + strand at 758.849 kb on + strand at 758.849 kb on + strand at 758.850 kb on - strand at 758.850 kb on - strand at 758.857 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 756,569 + -0.2 756,569 + +1.3 756,569 + -2.9 756,569 + +0.3 756,753 - SM_b21115 0.28 -1.2 757,041 + SM_b21115 0.87 -0.6 757,041 + SM_b21115 0.87 +0.3 757,151 + -0.1 757,151 + +0.4 757,152 - -1.4 757,214 - -0.8 757,567 + SM_b21116 0.34 +0.1 757,567 + SM_b21116 0.34 +1.0 757,567 + SM_b21116 0.34 +1.2 757,749 + SM_b21116 0.59 -0.1 757,749 + SM_b21116 0.59 +0.7 757,749 + SM_b21116 0.59 +0.4 757,750 - SM_b21116 0.59 +0.4 757,750 - SM_b21116 0.59 +0.2 757,750 - SM_b21116 0.59 -0.1 757,750 - SM_b21116 0.59 -0.3 757,753 + SM_b21116 0.59 +1.8 757,754 - SM_b21116 0.59 +0.0 757,754 - SM_b21116 0.59 -0.0 757,754 - SM_b21116 0.59 +0.5 757,754 - SM_b21116 0.59 -0.8 757,812 + SM_b21116 0.67 -0.5 758,118 + -0.4 758,118 + +0.1 758,118 + -0.7 758,119 - -0.1 758,119 - -0.0 758,119 - +0.5 758,119 - +0.7 758,119 - +0.2 758,119 - +0.1 758,119 - -0.3 758,119 - +0.2 758,119 - -0.4 758,405 + SM_b21117 0.59 +0.4 758,405 + SM_b21117 0.59 +0.4 758,406 - SM_b21117 0.59 -0.0 758,406 - SM_b21117 0.59 -0.4 758,406 - SM_b21117 0.59 -0.1 758,406 - SM_b21117 0.59 +0.4 758,406 - SM_b21117 0.59 +0.3 758,522 + SM_b21117 0.84 -0.5 758,522 + SM_b21117 0.84 +0.1 758,522 + SM_b21117 0.84 +0.4 758,523 - SM_b21117 0.85 +0.7 758,523 - SM_b21117 0.85 +0.3 758,576 - +0.5 758,598 + +0.6 758,599 - +0.6 758,599 - -0.8 758,625 + -0.3 758,625 + +0.6 758,626 - -1.6 758,632 + -0.1 758,634 + -0.0 758,634 + -0.5 758,635 - -0.6 758,706 + -0.6 758,849 + -0.9 758,849 + -1.7 758,850 - +0.7 758,850 - +0.4 758,857 - -0.1
Or see this region's nucleotide sequence