Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21095 and SM_b21096 are separated by 8 nucleotides SM_b21096 and SM_b21097 are separated by 49 nucleotides SM_b21097 and SM_b21098 are separated by 82 nucleotides
SM_b21095: SM_b21095 - amino acid ABC transporter permease, at 737,973 to 738,845
_b21095
SM_b21096: SM_b21096 - amino acid transporter ABC transporter ATP-binding protein, at 738,854 to 739,624
_b21096
SM_b21097: SM_b21097 - amino acid ABC transporter substrate-binding protein, at 739,674 to 740,516
_b21097
SM_b21098: SM_b21098 - hypothetical protein, at 740,599 to 741,396
_b21098
Position (kb) 739
740
741 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 738.679 kb on + strand, within SM_b21095 at 738.702 kb on + strand, within SM_b21095 at 738.702 kb on + strand, within SM_b21095 at 738.702 kb on + strand, within SM_b21095 at 738.702 kb on + strand, within SM_b21095 at 738.703 kb on - strand, within SM_b21095 at 738.703 kb on - strand, within SM_b21095 at 738.792 kb on + strand at 738.793 kb on - strand at 738.793 kb on - strand at 738.793 kb on - strand at 738.794 kb on + strand at 738.865 kb on + strand at 738.866 kb on - strand at 738.866 kb on - strand at 738.899 kb on + strand at 738.900 kb on - strand at 739.511 kb on - strand, within SM_b21096 at 739.807 kb on - strand, within SM_b21097 at 739.821 kb on + strand, within SM_b21097 at 739.822 kb on - strand, within SM_b21097 at 739.967 kb on + strand, within SM_b21097 at 739.973 kb on + strand, within SM_b21097 at 740.006 kb on + strand, within SM_b21097 at 740.025 kb on + strand, within SM_b21097 at 740.025 kb on + strand, within SM_b21097 at 740.050 kb on - strand, within SM_b21097 at 740.050 kb on - strand, within SM_b21097 at 740.107 kb on + strand, within SM_b21097 at 740.316 kb on + strand, within SM_b21097 at 740.317 kb on - strand, within SM_b21097 at 740.317 kb on - strand, within SM_b21097 at 740.350 kb on - strand, within SM_b21097 at 740.350 kb on - strand, within SM_b21097 at 740.350 kb on - strand, within SM_b21097 at 740.436 kb on + strand at 740.457 kb on + strand at 740.457 kb on + strand at 740.457 kb on + strand at 740.457 kb on + strand at 740.458 kb on - strand at 740.458 kb on - strand at 740.490 kb on + strand at 740.490 kb on + strand at 740.491 kb on - strand at 740.515 kb on - strand at 740.641 kb on + strand at 741.038 kb on - strand, within SM_b21098 at 741.364 kb on + strand at 741.365 kb on - strand at 741.417 kb on + strand at 741.417 kb on + strand at 741.417 kb on + strand at 741.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 738,679 + SM_b21095 0.81 +0.3 738,702 + SM_b21095 0.84 -1.4 738,702 + SM_b21095 0.84 -1.9 738,702 + SM_b21095 0.84 -0.3 738,702 + SM_b21095 0.84 -0.7 738,703 - SM_b21095 0.84 -0.5 738,703 - SM_b21095 0.84 +0.1 738,792 + +0.8 738,793 - +3.1 738,793 - -0.1 738,793 - -0.5 738,794 + -0.0 738,865 + -0.3 738,866 - -0.6 738,866 - -0.3 738,899 + -0.3 738,900 - +0.0 739,511 - SM_b21096 0.85 -1.1 739,807 - SM_b21097 0.16 -0.9 739,821 + SM_b21097 0.17 -0.3 739,822 - SM_b21097 0.18 -1.9 739,967 + SM_b21097 0.35 -0.6 739,973 + SM_b21097 0.35 +0.3 740,006 + SM_b21097 0.39 -1.4 740,025 + SM_b21097 0.42 -1.9 740,025 + SM_b21097 0.42 -0.6 740,050 - SM_b21097 0.45 +0.3 740,050 - SM_b21097 0.45 +0.1 740,107 + SM_b21097 0.51 +0.3 740,316 + SM_b21097 0.76 -0.2 740,317 - SM_b21097 0.76 -0.8 740,317 - SM_b21097 0.76 +0.1 740,350 - SM_b21097 0.80 +0.3 740,350 - SM_b21097 0.80 -0.6 740,350 - SM_b21097 0.80 -0.7 740,436 + -0.7 740,457 + -1.6 740,457 + -0.2 740,457 + +0.9 740,457 + -0.1 740,458 - -0.2 740,458 - +0.3 740,490 + -0.0 740,490 + +0.7 740,491 - +1.0 740,515 - +0.3 740,641 + +0.3 741,038 - SM_b21098 0.55 -0.5 741,364 + -0.6 741,365 - +0.5 741,417 + +0.2 741,417 + -0.2 741,417 + -1.1 741,418 - -0.2
Or see this region's nucleotide sequence