Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21025

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21022 and SM_b21023 are separated by 3 nucleotidesSM_b21023 and SM_b21024 are separated by 168 nucleotidesSM_b21024 and SM_b21025 are separated by 11 nucleotidesSM_b21025 and SM_b21026 are separated by 143 nucleotidesSM_b21026 and SM_b21027 are separated by 696 nucleotides SM_b21022: SM_b21022 - autoinducer-2 (AI-2) kinase, at 645,127 to 646,725 _b21022 SM_b21023: SM_b21023 - hypothetical protein, at 646,729 to 647,043 _b21023 SM_b21024: SM_b21024 - hypothetical protein, at 647,212 to 647,379 _b21024 SM_b21025: SM_b21025 - hypothetical protein, at 647,391 to 647,810 _b21025 SM_b21026: SM_b21026 - exopeptide, at 647,954 to 648,091 _b21026 SM_b21027: SM_b21027 - hypothetical protein, at 648,788 to 649,504 _b21027 Position (kb) 647 648Strain fitness (log2 ratio) -2 -1 0 1at 646.587 kb on + strandat 646.587 kb on + strandat 646.587 kb on + strandat 646.588 kb on - strandat 646.620 kb on + strandat 646.621 kb on - strandat 646.693 kb on + strandat 646.696 kb on - strandat 646.713 kb on + strandat 646.714 kb on - strandat 646.714 kb on - strandat 646.723 kb on + strandat 646.723 kb on + strandat 646.724 kb on - strandat 646.746 kb on + strandat 646.746 kb on + strandat 646.747 kb on - strandat 646.747 kb on - strandat 646.804 kb on + strand, within SM_b21023at 646.805 kb on - strand, within SM_b21023at 646.805 kb on - strand, within SM_b21023at 646.805 kb on - strand, within SM_b21023at 646.885 kb on + strand, within SM_b21023at 646.886 kb on - strand, within SM_b21023at 646.886 kb on - strand, within SM_b21023at 646.998 kb on - strand, within SM_b21023at 646.999 kb on + strand, within SM_b21023at 646.999 kb on + strand, within SM_b21023at 646.999 kb on + strand, within SM_b21023at 647.000 kb on - strand, within SM_b21023at 647.000 kb on - strand, within SM_b21023at 647.001 kb on + strand, within SM_b21023at 647.002 kb on - strand, within SM_b21023at 647.042 kb on - strandat 647.055 kb on + strandat 647.194 kb on - strandat 647.194 kb on - strandat 647.288 kb on + strand, within SM_b21024at 647.289 kb on - strand, within SM_b21024at 647.289 kb on - strand, within SM_b21024at 647.443 kb on - strand, within SM_b21025at 647.578 kb on + strand, within SM_b21025at 647.579 kb on - strand, within SM_b21025at 647.580 kb on + strand, within SM_b21025at 647.580 kb on + strand, within SM_b21025at 647.580 kb on + strand, within SM_b21025at 647.580 kb on + strand, within SM_b21025at 647.581 kb on - strand, within SM_b21025at 647.581 kb on - strand, within SM_b21025at 647.581 kb on - strand, within SM_b21025at 647.706 kb on - strand, within SM_b21025at 647.752 kb on - strand, within SM_b21025at 647.820 kb on - strandat 647.934 kb on + strandat 647.935 kb on - strandat 647.935 kb on - strandat 647.935 kb on - strandat 647.960 kb on + strandat 647.961 kb on - strandat 648.062 kb on + strand, within SM_b21026at 648.062 kb on + strand, within SM_b21026at 648.062 kb on + strand, within SM_b21026at 648.063 kb on - strand, within SM_b21026at 648.096 kb on + strandat 648.097 kb on - strandat 648.097 kb on - strandat 648.097 kb on - strandat 648.099 kb on + strandat 648.100 kb on - strandat 648.135 kb on + strandat 648.135 kb on + strandat 648.136 kb on - strandat 648.214 kb on + strandat 648.223 kb on + strandat 648.223 kb on + strandat 648.224 kb on - strandat 648.285 kb on - strandat 648.296 kb on + strandat 648.297 kb on - strandat 648.297 kb on - strandat 648.539 kb on + strandat 648.539 kb on + strandat 648.540 kb on - strandat 648.593 kb on - strandat 648.593 kb on - strandat 648.594 kb on + strandat 648.594 kb on + strandat 648.595 kb on - strandat 648.635 kb on - strandat 648.699 kb on + strandat 648.731 kb on + strandat 648.756 kb on + strandat 648.773 kb on + strandat 648.796 kb on + strandat 648.796 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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646,587 + +0.4
646,587 + +1.3
646,587 + +0.6
646,588 - -2.1
646,620 + -0.3
646,621 - -0.0
646,693 + -1.2
646,696 - +0.2
646,713 + -0.3
646,714 - +1.5
646,714 - -0.0
646,723 + +0.8
646,723 + -0.8
646,724 - +0.3
646,746 + +1.3
646,746 + -0.3
646,747 - -1.6
646,747 - +0.6
646,804 + SM_b21023 0.24 -0.1
646,805 - SM_b21023 0.24 -1.2
646,805 - SM_b21023 0.24 +0.1
646,805 - SM_b21023 0.24 +0.0
646,885 + SM_b21023 0.50 -0.3
646,886 - SM_b21023 0.50 +0.9
646,886 - SM_b21023 0.50 -0.5
646,998 - SM_b21023 0.85 -0.9
646,999 + SM_b21023 0.86 +0.4
646,999 + SM_b21023 0.86 +0.0
646,999 + SM_b21023 0.86 -1.7
647,000 - SM_b21023 0.86 +0.1
647,000 - SM_b21023 0.86 -1.3
647,001 + SM_b21023 0.86 +0.3
647,002 - SM_b21023 0.87 -0.5
647,042 - +0.1
647,055 + -0.2
647,194 - -0.3
647,194 - +0.1
647,288 + SM_b21024 0.45 +0.2
647,289 - SM_b21024 0.46 -0.2
647,289 - SM_b21024 0.46 -0.5
647,443 - SM_b21025 0.12 +0.1
647,578 + SM_b21025 0.45 -0.7
647,579 - SM_b21025 0.45 -0.6
647,580 + SM_b21025 0.45 -0.2
647,580 + SM_b21025 0.45 -0.2
647,580 + SM_b21025 0.45 -2.3
647,580 + SM_b21025 0.45 -1.0
647,581 - SM_b21025 0.45 -1.0
647,581 - SM_b21025 0.45 -0.1
647,581 - SM_b21025 0.45 -0.4
647,706 - SM_b21025 0.75 +0.2
647,752 - SM_b21025 0.86 +0.7
647,820 - +0.6
647,934 + +0.6
647,935 - +0.7
647,935 - +0.6
647,935 - +0.1
647,960 + +0.1
647,961 - -1.1
648,062 + SM_b21026 0.78 -1.5
648,062 + SM_b21026 0.78 -0.1
648,062 + SM_b21026 0.78 +0.4
648,063 - SM_b21026 0.79 -0.9
648,096 + -0.7
648,097 - +0.4
648,097 - -1.2
648,097 - -1.3
648,099 + -0.1
648,100 - +0.1
648,135 + -0.4
648,135 + +0.1
648,136 - -0.3
648,214 + -1.0
648,223 + +0.0
648,223 + -0.3
648,224 - +0.1
648,285 - -0.1
648,296 + +0.1
648,297 - -0.2
648,297 - -0.4
648,539 + +0.2
648,539 + +1.2
648,540 - -1.2
648,593 - -0.1
648,593 - +0.1
648,594 + -0.1
648,594 + -0.2
648,595 - +0.2
648,635 - -1.1
648,699 + +0.7
648,731 + +0.2
648,756 + -1.2
648,773 + -0.7
648,796 + -0.7
648,796 + +0.1

Or see this region's nucleotide sequence