Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20987 and SM_b20988 are separated by 24 nucleotides SM_b20988 and SM_b20989 are separated by 531 nucleotides
SM_b20987: SM_b20987 - siroheme synthase, at 1,220,792 to 1,221,874
_b20987
SM_b20988: SM_b20988 - hypothetical protein, at 1,221,899 to 1,222,384
_b20988
SM_b20989: SM_b20989 - stomatin-like protein, at 1,222,916 to 1,223,686
_b20989
Position (kb)
1221
1222
1223 Strain fitness (log2 ratio)
-2
-1
0
1 at 1220.921 kb on + strand, within SM_b20987 at 1220.922 kb on - strand, within SM_b20987 at 1221.408 kb on + strand, within SM_b20987 at 1221.408 kb on + strand, within SM_b20987 at 1221.977 kb on + strand, within SM_b20988 at 1221.977 kb on + strand, within SM_b20988 at 1221.978 kb on - strand, within SM_b20988 at 1221.978 kb on - strand, within SM_b20988 at 1221.978 kb on - strand, within SM_b20988 at 1222.122 kb on + strand, within SM_b20988 at 1222.122 kb on + strand, within SM_b20988 at 1222.184 kb on + strand, within SM_b20988 at 1222.251 kb on + strand, within SM_b20988 at 1222.251 kb on + strand, within SM_b20988 at 1222.251 kb on + strand, within SM_b20988 at 1222.251 kb on + strand, within SM_b20988 at 1222.251 kb on + strand, within SM_b20988 at 1222.251 kb on + strand, within SM_b20988 at 1222.252 kb on - strand, within SM_b20988 at 1222.252 kb on - strand, within SM_b20988 at 1222.252 kb on - strand, within SM_b20988 at 1222.347 kb on + strand at 1222.348 kb on - strand at 1222.354 kb on - strand at 1222.472 kb on - strand at 1222.472 kb on - strand at 1222.472 kb on - strand at 1222.587 kb on - strand at 1222.616 kb on + strand at 1222.617 kb on - strand at 1222.631 kb on - strand at 1222.979 kb on + strand at 1222.979 kb on + strand at 1222.980 kb on - strand at 1223.026 kb on - strand, within SM_b20989 at 1223.026 kb on - strand, within SM_b20989 at 1223.030 kb on + strand, within SM_b20989 at 1223.030 kb on + strand, within SM_b20989 at 1223.030 kb on + strand, within SM_b20989 at 1223.030 kb on + strand, within SM_b20989 at 1223.031 kb on - strand, within SM_b20989 at 1223.031 kb on - strand, within SM_b20989 at 1223.031 kb on - strand, within SM_b20989 at 1223.031 kb on - strand, within SM_b20989 at 1223.318 kb on + strand, within SM_b20989 at 1223.319 kb on - strand, within SM_b20989
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,220,921 + SM_b20987 0.12 -0.0 1,220,922 - SM_b20987 0.12 -0.9 1,221,408 + SM_b20987 0.57 -2.0 1,221,408 + SM_b20987 0.57 -2.1 1,221,977 + SM_b20988 0.16 -1.2 1,221,977 + SM_b20988 0.16 +0.0 1,221,978 - SM_b20988 0.16 -0.3 1,221,978 - SM_b20988 0.16 -1.2 1,221,978 - SM_b20988 0.16 -0.3 1,222,122 + SM_b20988 0.46 +0.5 1,222,122 + SM_b20988 0.46 -0.9 1,222,184 + SM_b20988 0.59 +0.3 1,222,251 + SM_b20988 0.72 +0.1 1,222,251 + SM_b20988 0.72 -0.7 1,222,251 + SM_b20988 0.72 -0.9 1,222,251 + SM_b20988 0.72 +0.0 1,222,251 + SM_b20988 0.72 -1.2 1,222,251 + SM_b20988 0.72 -0.7 1,222,252 - SM_b20988 0.73 -0.7 1,222,252 - SM_b20988 0.73 -0.5 1,222,252 - SM_b20988 0.73 +0.6 1,222,347 + +0.1 1,222,348 - -0.3 1,222,354 - +0.0 1,222,472 - +0.4 1,222,472 - -0.5 1,222,472 - +0.1 1,222,587 - +1.0 1,222,616 + -0.2 1,222,617 - -0.6 1,222,631 - +0.9 1,222,979 + -0.6 1,222,979 + -0.9 1,222,980 - -0.8 1,223,026 - SM_b20989 0.14 +0.5 1,223,026 - SM_b20989 0.14 +1.2 1,223,030 + SM_b20989 0.15 -0.2 1,223,030 + SM_b20989 0.15 -1.9 1,223,030 + SM_b20989 0.15 +0.2 1,223,030 + SM_b20989 0.15 +0.1 1,223,031 - SM_b20989 0.15 +0.4 1,223,031 - SM_b20989 0.15 +0.2 1,223,031 - SM_b20989 0.15 -0.6 1,223,031 - SM_b20989 0.15 -0.1 1,223,318 + SM_b20989 0.52 +0.8 1,223,319 - SM_b20989 0.52 -0.6
Or see this region's nucleotide sequence