Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20966 and SM_b20967 are separated by 189 nucleotides SM_b20967 and SM_b20968 are separated by 7 nucleotides
SM_b20966: SM_b20966 - beta-galactosidase, at 1,194,246 to 1,196,186
_b20966
SM_b20967: SM_b20967 - LacI family transcriptional regulator, at 1,196,376 to 1,197,410
_b20967
SM_b20968: SM_b20968 - hypothetical protein, at 1,197,418 to 1,199,130
_b20968
Position (kb)
1196
1197
1198 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1195.400 kb on - strand, within SM_b20966 at 1195.441 kb on + strand, within SM_b20966 at 1195.441 kb on + strand, within SM_b20966 at 1195.441 kb on + strand, within SM_b20966 at 1195.634 kb on + strand, within SM_b20966 at 1195.634 kb on + strand, within SM_b20966 at 1195.635 kb on - strand, within SM_b20966 at 1195.697 kb on - strand, within SM_b20966 at 1195.697 kb on - strand, within SM_b20966 at 1195.744 kb on + strand, within SM_b20966 at 1195.745 kb on - strand, within SM_b20966 at 1195.745 kb on - strand, within SM_b20966 at 1195.745 kb on - strand, within SM_b20966 at 1195.750 kb on + strand, within SM_b20966 at 1195.751 kb on - strand, within SM_b20966 at 1195.771 kb on + strand at 1195.772 kb on - strand, within SM_b20966 at 1195.801 kb on + strand, within SM_b20966 at 1195.801 kb on + strand, within SM_b20966 at 1195.801 kb on + strand, within SM_b20966 at 1195.801 kb on + strand, within SM_b20966 at 1195.801 kb on + strand, within SM_b20966 at 1195.802 kb on - strand, within SM_b20966 at 1195.802 kb on - strand, within SM_b20966 at 1195.802 kb on - strand, within SM_b20966 at 1195.802 kb on - strand, within SM_b20966 at 1195.882 kb on + strand, within SM_b20966 at 1195.883 kb on - strand, within SM_b20966 at 1196.073 kb on + strand at 1196.074 kb on - strand at 1196.179 kb on + strand at 1196.179 kb on + strand at 1196.179 kb on + strand at 1196.180 kb on - strand at 1196.180 kb on - strand at 1196.261 kb on + strand at 1196.261 kb on + strand at 1196.262 kb on - strand at 1196.340 kb on - strand at 1196.340 kb on - strand at 1196.340 kb on - strand at 1196.340 kb on - strand at 1196.341 kb on + strand at 1196.518 kb on + strand, within SM_b20967 at 1196.521 kb on + strand, within SM_b20967 at 1196.522 kb on - strand, within SM_b20967 at 1196.522 kb on - strand, within SM_b20967 at 1196.545 kb on + strand, within SM_b20967 at 1196.660 kb on + strand, within SM_b20967 at 1196.660 kb on + strand, within SM_b20967 at 1196.660 kb on + strand, within SM_b20967 at 1196.661 kb on - strand, within SM_b20967 at 1196.661 kb on - strand, within SM_b20967 at 1196.661 kb on - strand, within SM_b20967 at 1196.662 kb on + strand, within SM_b20967 at 1196.663 kb on - strand, within SM_b20967 at 1196.759 kb on - strand, within SM_b20967 at 1196.816 kb on - strand, within SM_b20967 at 1196.921 kb on - strand, within SM_b20967 at 1196.921 kb on - strand, within SM_b20967 at 1196.921 kb on - strand, within SM_b20967 at 1196.921 kb on - strand, within SM_b20967 at 1196.953 kb on + strand, within SM_b20967 at 1196.954 kb on - strand, within SM_b20967 at 1197.143 kb on + strand, within SM_b20967 at 1197.143 kb on + strand, within SM_b20967 at 1197.144 kb on - strand, within SM_b20967 at 1197.226 kb on + strand, within SM_b20967 at 1197.227 kb on - strand, within SM_b20967 at 1197.271 kb on + strand, within SM_b20967 at 1197.467 kb on + strand at 1197.467 kb on + strand at 1197.540 kb on + strand at 1197.540 kb on + strand at 1197.632 kb on + strand, within SM_b20968 at 1197.632 kb on + strand, within SM_b20968 at 1197.632 kb on + strand, within SM_b20968 at 1197.633 kb on - strand, within SM_b20968 at 1197.633 kb on - strand, within SM_b20968 at 1197.633 kb on - strand, within SM_b20968 at 1198.080 kb on - strand, within SM_b20968 at 1198.158 kb on - strand, within SM_b20968 at 1198.271 kb on + strand, within SM_b20968
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,195,400 - SM_b20966 0.59 -0.4 1,195,441 + SM_b20966 0.62 -1.2 1,195,441 + SM_b20966 0.62 +0.7 1,195,441 + SM_b20966 0.62 -0.5 1,195,634 + SM_b20966 0.72 -2.9 1,195,634 + SM_b20966 0.72 -0.2 1,195,635 - SM_b20966 0.72 +1.4 1,195,697 - SM_b20966 0.75 +0.0 1,195,697 - SM_b20966 0.75 -0.3 1,195,744 + SM_b20966 0.77 +1.4 1,195,745 - SM_b20966 0.77 -0.5 1,195,745 - SM_b20966 0.77 +1.2 1,195,745 - SM_b20966 0.77 -0.4 1,195,750 + SM_b20966 0.77 +0.4 1,195,751 - SM_b20966 0.78 +0.1 1,195,771 + +0.6 1,195,772 - SM_b20966 0.79 -0.3 1,195,801 + SM_b20966 0.80 -0.1 1,195,801 + SM_b20966 0.80 -0.1 1,195,801 + SM_b20966 0.80 -0.0 1,195,801 + SM_b20966 0.80 +1.1 1,195,801 + SM_b20966 0.80 +0.1 1,195,802 - SM_b20966 0.80 -2.7 1,195,802 - SM_b20966 0.80 -0.4 1,195,802 - SM_b20966 0.80 +0.0 1,195,802 - SM_b20966 0.80 +0.6 1,195,882 + SM_b20966 0.84 +0.6 1,195,883 - SM_b20966 0.84 +0.6 1,196,073 + +0.4 1,196,074 - -0.7 1,196,179 + +0.3 1,196,179 + -2.3 1,196,179 + -0.8 1,196,180 - +0.4 1,196,180 - -0.0 1,196,261 + +3.3 1,196,261 + -0.1 1,196,262 - -0.5 1,196,340 - -1.4 1,196,340 - +0.2 1,196,340 - -0.2 1,196,340 - -0.3 1,196,341 + +0.3 1,196,518 + SM_b20967 0.14 +0.0 1,196,521 + SM_b20967 0.14 -1.1 1,196,522 - SM_b20967 0.14 -0.7 1,196,522 - SM_b20967 0.14 +0.3 1,196,545 + SM_b20967 0.16 +1.1 1,196,660 + SM_b20967 0.27 -0.3 1,196,660 + SM_b20967 0.27 -0.6 1,196,660 + SM_b20967 0.27 -1.8 1,196,661 - SM_b20967 0.28 +0.3 1,196,661 - SM_b20967 0.28 -0.3 1,196,661 - SM_b20967 0.28 -0.5 1,196,662 + SM_b20967 0.28 +0.0 1,196,663 - SM_b20967 0.28 +0.3 1,196,759 - SM_b20967 0.37 -0.5 1,196,816 - SM_b20967 0.43 -0.7 1,196,921 - SM_b20967 0.53 +0.5 1,196,921 - SM_b20967 0.53 -0.8 1,196,921 - SM_b20967 0.53 -2.3 1,196,921 - SM_b20967 0.53 +0.1 1,196,953 + SM_b20967 0.56 +0.4 1,196,954 - SM_b20967 0.56 -0.4 1,197,143 + SM_b20967 0.74 -2.7 1,197,143 + SM_b20967 0.74 +1.2 1,197,144 - SM_b20967 0.74 -0.1 1,197,226 + SM_b20967 0.82 -0.0 1,197,227 - SM_b20967 0.82 -0.3 1,197,271 + SM_b20967 0.86 -0.5 1,197,467 + -0.2 1,197,467 + -1.8 1,197,540 + -0.2 1,197,540 + -1.3 1,197,632 + SM_b20968 0.12 +0.0 1,197,632 + SM_b20968 0.12 +0.2 1,197,632 + SM_b20968 0.12 +1.3 1,197,633 - SM_b20968 0.13 -1.0 1,197,633 - SM_b20968 0.13 +0.4 1,197,633 - SM_b20968 0.13 -1.2 1,198,080 - SM_b20968 0.39 +0.2 1,198,158 - SM_b20968 0.43 +0.6 1,198,271 + SM_b20968 0.50 +0.0
Or see this region's nucleotide sequence