Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20951 and SM_b20952 are separated by 19 nucleotides SM_b20952 and SM_b20953 are separated by 90 nucleotides SM_b20953 and SM_b20954 are separated by 138 nucleotides SM_b20954 and SM_b20955 are separated by 5 nucleotides SM_b20955 and SM_b20956 are separated by 95 nucleotides
SM_b20951: SM_b20951 - hypothetical protein, at 1,179,773 to 1,180,348
_b20951
SM_b20952: SM_b20952 - hypothetical protein, at 1,180,368 to 1,180,625
_b20952
SM_b20953: SM_b20953 - hypothetical protein, at 1,180,716 to 1,181,099
_b20953
SM_b20954: SM_b20954 - succinyltransferase, at 1,181,238 to 1,182,350
_b20954
SM_b20955: SM_b20955 - endo-beta-1,3-1,4-glycanase, at 1,182,356 to 1,183,165
_b20955
SM_b20956: SM_b20956 - glucosyltransferase, at 1,183,261 to 1,184,472
_b20956
Position (kb)
1181
1182
1183 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1180.376 kb on - strand at 1180.376 kb on - strand at 1180.436 kb on + strand, within SM_b20952 at 1180.436 kb on + strand, within SM_b20952 at 1180.436 kb on + strand, within SM_b20952 at 1180.436 kb on + strand, within SM_b20952 at 1180.436 kb on + strand, within SM_b20952 at 1180.437 kb on - strand, within SM_b20952 at 1180.437 kb on - strand, within SM_b20952 at 1180.437 kb on - strand, within SM_b20952 at 1180.437 kb on - strand, within SM_b20952 at 1180.437 kb on - strand, within SM_b20952 at 1180.437 kb on - strand, within SM_b20952 at 1180.638 kb on + strand at 1180.639 kb on - strand at 1180.670 kb on - strand at 1180.859 kb on - strand, within SM_b20953 at 1181.150 kb on + strand at 1181.228 kb on + strand at 1181.229 kb on - strand at 1181.237 kb on + strand at 1181.276 kb on + strand at 1181.276 kb on + strand at 1181.277 kb on - strand at 1181.277 kb on - strand at 1181.317 kb on - strand at 1181.349 kb on + strand at 1181.350 kb on - strand, within SM_b20954 at 1181.520 kb on - strand, within SM_b20954 at 1181.670 kb on + strand, within SM_b20954 at 1181.696 kb on + strand, within SM_b20954 at 1181.943 kb on + strand, within SM_b20954 at 1181.944 kb on - strand, within SM_b20954 at 1181.946 kb on + strand, within SM_b20954 at 1181.946 kb on + strand, within SM_b20954 at 1181.947 kb on - strand, within SM_b20954 at 1182.163 kb on - strand, within SM_b20954 at 1182.163 kb on - strand, within SM_b20954 at 1182.267 kb on - strand at 1182.348 kb on + strand at 1182.349 kb on - strand at 1182.372 kb on - strand at 1182.734 kb on + strand, within SM_b20955 at 1182.735 kb on - strand at 1182.821 kb on + strand, within SM_b20955 at 1182.821 kb on + strand, within SM_b20955 at 1182.821 kb on + strand, within SM_b20955 at 1182.893 kb on + strand, within SM_b20955 at 1182.930 kb on - strand, within SM_b20955 at 1183.053 kb on - strand, within SM_b20955 at 1183.221 kb on + strand at 1183.221 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,180,376 - -0.4 1,180,376 - -0.5 1,180,436 + SM_b20952 0.26 +0.2 1,180,436 + SM_b20952 0.26 -0.1 1,180,436 + SM_b20952 0.26 -1.7 1,180,436 + SM_b20952 0.26 +0.0 1,180,436 + SM_b20952 0.26 +0.3 1,180,437 - SM_b20952 0.27 -0.2 1,180,437 - SM_b20952 0.27 -0.7 1,180,437 - SM_b20952 0.27 +0.3 1,180,437 - SM_b20952 0.27 +0.0 1,180,437 - SM_b20952 0.27 +0.7 1,180,437 - SM_b20952 0.27 -0.5 1,180,638 + -0.2 1,180,639 - +0.6 1,180,670 - +0.1 1,180,859 - SM_b20953 0.37 -0.6 1,181,150 + +0.2 1,181,228 + +0.0 1,181,229 - +0.3 1,181,237 + +0.2 1,181,276 + -0.4 1,181,276 + +0.0 1,181,277 - +0.8 1,181,277 - +2.0 1,181,317 - +2.1 1,181,349 + +0.0 1,181,350 - SM_b20954 0.10 +0.3 1,181,520 - SM_b20954 0.25 +0.4 1,181,670 + SM_b20954 0.39 +0.4 1,181,696 + SM_b20954 0.41 +0.4 1,181,943 + SM_b20954 0.63 +0.6 1,181,944 - SM_b20954 0.63 -0.6 1,181,946 + SM_b20954 0.64 +0.4 1,181,946 + SM_b20954 0.64 +0.8 1,181,947 - SM_b20954 0.64 +1.0 1,182,163 - SM_b20954 0.83 +1.8 1,182,163 - SM_b20954 0.83 -0.0 1,182,267 - +1.2 1,182,348 + -0.5 1,182,349 - -0.5 1,182,372 - +0.2 1,182,734 + SM_b20955 0.47 +2.4 1,182,735 - +1.1 1,182,821 + SM_b20955 0.57 -3.1 1,182,821 + SM_b20955 0.57 +0.4 1,182,821 + SM_b20955 0.57 -0.8 1,182,893 + SM_b20955 0.66 -0.0 1,182,930 - SM_b20955 0.71 +0.5 1,183,053 - SM_b20955 0.86 +0.2 1,183,221 + -2.0 1,183,221 + +2.4
Or see this region's nucleotide sequence