Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20901

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20900 and SM_b21679 are separated by 9 nucleotidesSM_b21679 and SM_b20901 are separated by 125 nucleotidesSM_b20901 and SM_b20902 are separated by 385 nucleotides SM_b20900: SM_b20900 - hypothetical protein, at 1,307,831 to 1,309,765 _b20900 SM_b21679: SM_b21679 - hypothetical protein, at 1,309,775 to 1,309,963 _b21679 SM_b20901: SM_b20901 - transcriptional regulator, at 1,310,089 to 1,311,300 _b20901 SM_b20902: SM_b20902 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,311,686 to 1,312,723 _b20902 Position (kb) 1310 1311 1312Strain fitness (log2 ratio) -3 -2 -1 0 1at 1309.787 kb on + strandat 1309.787 kb on + strandat 1309.824 kb on + strand, within SM_b21679at 1310.021 kb on - strandat 1310.159 kb on - strandat 1310.188 kb on + strandat 1310.189 kb on - strandat 1310.189 kb on - strandat 1310.369 kb on + strand, within SM_b20901at 1310.370 kb on - strand, within SM_b20901at 1310.370 kb on - strand, within SM_b20901at 1310.489 kb on + strand, within SM_b20901at 1310.489 kb on + strand, within SM_b20901at 1310.489 kb on + strand, within SM_b20901at 1310.519 kb on + strand, within SM_b20901at 1310.519 kb on + strand, within SM_b20901at 1310.562 kb on + strand, within SM_b20901at 1310.562 kb on + strand, within SM_b20901at 1310.562 kb on + strand, within SM_b20901at 1310.562 kb on + strand, within SM_b20901at 1310.562 kb on + strand, within SM_b20901at 1310.562 kb on + strand, within SM_b20901at 1310.563 kb on - strand, within SM_b20901at 1310.563 kb on - strand, within SM_b20901at 1311.000 kb on - strand, within SM_b20901at 1311.000 kb on - strand, within SM_b20901at 1311.000 kb on - strand, within SM_b20901at 1311.014 kb on + strand, within SM_b20901at 1311.053 kb on + strand, within SM_b20901at 1311.053 kb on + strand, within SM_b20901at 1311.229 kb on - strandat 1311.229 kb on - strandat 1311.682 kb on + strandat 1311.726 kb on + strandat 1311.727 kb on - strandat 1311.727 kb on - strandat 1311.854 kb on - strand, within SM_b20902at 1311.854 kb on - strand, within SM_b20902at 1311.857 kb on + strand, within SM_b20902at 1311.857 kb on + strand, within SM_b20902at 1311.857 kb on + strand, within SM_b20902at 1311.857 kb on + strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.860 kb on - strand, within SM_b20902at 1311.860 kb on - strand, within SM_b20902at 1312.052 kb on + strand, within SM_b20902at 1312.053 kb on - strand, within SM_b20902at 1312.245 kb on - strand, within SM_b20902at 1312.245 kb on - strand, within SM_b20902at 1312.247 kb on - strand, within SM_b20902at 1312.247 kb on - strand, within SM_b20902at 1312.264 kb on + strand, within SM_b20902

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,309,787 + +0.2
1,309,787 + +0.2
1,309,824 + SM_b21679 0.26 +0.0
1,310,021 - -0.0
1,310,159 - -2.9
1,310,188 + -0.4
1,310,189 - -0.3
1,310,189 - -1.1
1,310,369 + SM_b20901 0.23 -0.1
1,310,370 - SM_b20901 0.23 -1.2
1,310,370 - SM_b20901 0.23 -0.8
1,310,489 + SM_b20901 0.33 +0.3
1,310,489 + SM_b20901 0.33 -0.5
1,310,489 + SM_b20901 0.33 -1.3
1,310,519 + SM_b20901 0.35 -1.9
1,310,519 + SM_b20901 0.35 -1.6
1,310,562 + SM_b20901 0.39 -0.1
1,310,562 + SM_b20901 0.39 -1.2
1,310,562 + SM_b20901 0.39 +0.1
1,310,562 + SM_b20901 0.39 -0.2
1,310,562 + SM_b20901 0.39 -1.2
1,310,562 + SM_b20901 0.39 -0.8
1,310,563 - SM_b20901 0.39 -0.9
1,310,563 - SM_b20901 0.39 -0.8
1,311,000 - SM_b20901 0.75 +1.5
1,311,000 - SM_b20901 0.75 -1.0
1,311,000 - SM_b20901 0.75 -0.3
1,311,014 + SM_b20901 0.76 -1.2
1,311,053 + SM_b20901 0.80 -0.1
1,311,053 + SM_b20901 0.80 -1.7
1,311,229 - -0.3
1,311,229 - -1.0
1,311,682 + +0.5
1,311,726 + +0.2
1,311,727 - +0.1
1,311,727 - +0.4
1,311,854 - SM_b20902 0.16 +0.5
1,311,854 - SM_b20902 0.16 +0.3
1,311,857 + SM_b20902 0.16 -0.9
1,311,857 + SM_b20902 0.16 -0.2
1,311,857 + SM_b20902 0.16 -0.1
1,311,857 + SM_b20902 0.16 +0.1
1,311,858 - SM_b20902 0.17 -0.6
1,311,858 - SM_b20902 0.17 +0.0
1,311,858 - SM_b20902 0.17 -0.3
1,311,858 - SM_b20902 0.17 +1.4
1,311,858 - SM_b20902 0.17 +0.3
1,311,858 - SM_b20902 0.17 +0.3
1,311,860 - SM_b20902 0.17 +0.6
1,311,860 - SM_b20902 0.17 +0.3
1,312,052 + SM_b20902 0.35 -0.3
1,312,053 - SM_b20902 0.35 +0.5
1,312,245 - SM_b20902 0.54 -2.4
1,312,245 - SM_b20902 0.54 +0.4
1,312,247 - SM_b20902 0.54 -0.1
1,312,247 - SM_b20902 0.54 +0.1
1,312,264 + SM_b20902 0.56 +0.3

Or see this region's nucleotide sequence