Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20896

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20895 and SM_b20896 are separated by 346 nucleotidesSM_b20896 and SM_b20897 are separated by 64 nucleotidesSM_b20897 and SM_b20898 are separated by 3 nucleotidesSM_b20898 and SM_b21678 are separated by 52 nucleotides SM_b20895: SM_b20895 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,303,027 to 1,304,094 _b20895 SM_b20896: SM_b20896 - LysR family transcriptional regulator, at 1,304,441 to 1,305,349 _b20896 SM_b20897: SM_b20897 - hypothetical protein, at 1,305,414 to 1,305,866 _b20897 SM_b20898: SM_b20898 - hypothetical protein, at 1,305,870 to 1,306,280 _b20898 SM_b21678: SM_b21678 - hypothetical protein, at 1,306,333 to 1,306,524 _b21678 Position (kb) 1304 1305 1306Strain fitness (log2 ratio) -2 -1 0 1at 1303.715 kb on + strand, within SM_b20895at 1303.716 kb on - strand, within SM_b20895at 1303.716 kb on - strand, within SM_b20895at 1303.716 kb on - strand, within SM_b20895at 1303.718 kb on + strand, within SM_b20895at 1303.754 kb on + strand, within SM_b20895at 1303.755 kb on - strand, within SM_b20895at 1303.920 kb on + strand, within SM_b20895at 1304.193 kb on + strandat 1304.193 kb on + strandat 1304.194 kb on - strandat 1304.214 kb on + strandat 1304.214 kb on + strandat 1304.215 kb on - strandat 1304.220 kb on - strandat 1304.241 kb on + strandat 1304.241 kb on + strandat 1304.241 kb on + strandat 1304.241 kb on + strandat 1304.242 kb on - strandat 1304.242 kb on - strandat 1304.242 kb on - strandat 1305.037 kb on + strand, within SM_b20896at 1305.038 kb on - strand, within SM_b20896at 1305.109 kb on + strand, within SM_b20896at 1305.109 kb on + strand, within SM_b20896at 1305.109 kb on + strand, within SM_b20896at 1305.109 kb on + strand, within SM_b20896at 1305.110 kb on - strand, within SM_b20896at 1305.264 kb on - strandat 1305.591 kb on + strand, within SM_b20897at 1305.642 kb on + strand, within SM_b20897at 1305.643 kb on - strand, within SM_b20897at 1305.643 kb on - strand, within SM_b20897at 1305.865 kb on - strandat 1305.865 kb on - strandat 1305.964 kb on + strand, within SM_b20898at 1306.032 kb on + strand, within SM_b20898at 1306.069 kb on - strand, within SM_b20898at 1306.078 kb on + strand, within SM_b20898at 1306.079 kb on - strand, within SM_b20898at 1306.079 kb on - strand, within SM_b20898at 1306.079 kb on - strand, within SM_b20898at 1306.134 kb on + strand, within SM_b20898at 1306.135 kb on - strand, within SM_b20898at 1306.135 kb on - strand, within SM_b20898at 1306.149 kb on + strand, within SM_b20898at 1306.150 kb on - strand, within SM_b20898at 1306.150 kb on - strand, within SM_b20898at 1306.150 kb on - strand, within SM_b20898at 1306.157 kb on - strand, within SM_b20898at 1306.168 kb on + strand, within SM_b20898at 1306.168 kb on + strand, within SM_b20898at 1306.172 kb on + strand, within SM_b20898at 1306.172 kb on + strand, within SM_b20898at 1306.180 kb on - strand, within SM_b20898at 1306.180 kb on - strand, within SM_b20898at 1306.180 kb on - strand, within SM_b20898at 1306.180 kb on - strand, within SM_b20898at 1306.243 kb on + strandat 1306.243 kb on + strandat 1306.243 kb on + strandat 1306.243 kb on + strandat 1306.247 kb on + strandat 1306.247 kb on + strandat 1306.247 kb on + strandat 1306.248 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,303,715 + SM_b20895 0.64 -1.7
1,303,716 - SM_b20895 0.65 +1.0
1,303,716 - SM_b20895 0.65 -0.3
1,303,716 - SM_b20895 0.65 +1.3
1,303,718 + SM_b20895 0.65 -0.2
1,303,754 + SM_b20895 0.68 -0.4
1,303,755 - SM_b20895 0.68 -0.2
1,303,920 + SM_b20895 0.84 -0.8
1,304,193 + -0.0
1,304,193 + +0.2
1,304,194 - +0.1
1,304,214 + -0.0
1,304,214 + +0.6
1,304,215 - -0.4
1,304,220 - -0.9
1,304,241 + +0.4
1,304,241 + +0.3
1,304,241 + +0.1
1,304,241 + +0.0
1,304,242 - -0.4
1,304,242 - -0.6
1,304,242 - -0.2
1,305,037 + SM_b20896 0.66 -1.3
1,305,038 - SM_b20896 0.66 -0.9
1,305,109 + SM_b20896 0.73 +0.3
1,305,109 + SM_b20896 0.73 -0.3
1,305,109 + SM_b20896 0.73 -1.4
1,305,109 + SM_b20896 0.73 -1.2
1,305,110 - SM_b20896 0.74 -0.8
1,305,264 - -0.9
1,305,591 + SM_b20897 0.39 -0.4
1,305,642 + SM_b20897 0.50 -0.4
1,305,643 - SM_b20897 0.51 -0.5
1,305,643 - SM_b20897 0.51 +0.6
1,305,865 - -0.0
1,305,865 - -0.9
1,305,964 + SM_b20898 0.23 +1.1
1,306,032 + SM_b20898 0.39 +0.1
1,306,069 - SM_b20898 0.48 +0.3
1,306,078 + SM_b20898 0.51 +0.3
1,306,079 - SM_b20898 0.51 +0.3
1,306,079 - SM_b20898 0.51 +1.0
1,306,079 - SM_b20898 0.51 -0.6
1,306,134 + SM_b20898 0.64 -0.5
1,306,135 - SM_b20898 0.64 -1.0
1,306,135 - SM_b20898 0.64 +0.2
1,306,149 + SM_b20898 0.68 -0.5
1,306,150 - SM_b20898 0.68 +0.6
1,306,150 - SM_b20898 0.68 -0.3
1,306,150 - SM_b20898 0.68 -0.2
1,306,157 - SM_b20898 0.70 -0.9
1,306,168 + SM_b20898 0.73 -0.4
1,306,168 + SM_b20898 0.73 -0.2
1,306,172 + SM_b20898 0.73 -0.2
1,306,172 + SM_b20898 0.73 -0.6
1,306,180 - SM_b20898 0.75 -1.7
1,306,180 - SM_b20898 0.75 -0.2
1,306,180 - SM_b20898 0.75 -0.4
1,306,180 - SM_b20898 0.75 +1.0
1,306,243 + -2.3
1,306,243 + +0.6
1,306,243 + -0.5
1,306,243 + -0.1
1,306,247 + +0.6
1,306,247 + -0.1
1,306,247 + +0.5
1,306,248 - -0.7

Or see this region's nucleotide sequence