Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20829 and SM_b20830 are separated by 259 nucleotides SM_b20830 and SM_b20831 are separated by 74 nucleotides
SM_b20829: SM_b20829 - secreted calcium-binding protein, at 619,946 to 621,625
_b20829
SM_b20830: SM_b20830 - arabinose-5-phosphate isomerase, at 621,885 to 622,898
_b20830
SM_b20831: SM_b20831 - polysaccharide export-assoiated protein, at 622,973 to 623,926
_b20831
Position (kb) 621
622
623 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 620.910 kb on + strand, within SM_b20829 at 620.910 kb on + strand, within SM_b20829 at 620.910 kb on + strand, within SM_b20829 at 620.911 kb on - strand, within SM_b20829 at 620.911 kb on - strand, within SM_b20829 at 621.012 kb on + strand, within SM_b20829 at 621.012 kb on + strand, within SM_b20829 at 621.013 kb on - strand, within SM_b20829 at 621.013 kb on - strand, within SM_b20829 at 621.013 kb on - strand, within SM_b20829 at 621.013 kb on - strand, within SM_b20829 at 621.057 kb on + strand, within SM_b20829 at 621.058 kb on - strand, within SM_b20829 at 621.138 kb on - strand, within SM_b20829 at 621.264 kb on - strand, within SM_b20829 at 621.264 kb on - strand, within SM_b20829 at 621.264 kb on - strand, within SM_b20829 at 621.264 kb on - strand, within SM_b20829 at 621.375 kb on - strand, within SM_b20829 at 621.375 kb on - strand, within SM_b20829 at 621.379 kb on + strand, within SM_b20829 at 621.380 kb on - strand, within SM_b20829 at 621.422 kb on - strand, within SM_b20829 at 621.500 kb on - strand at 621.534 kb on + strand at 621.535 kb on - strand at 621.538 kb on + strand at 621.539 kb on - strand at 621.539 kb on - strand at 621.539 kb on - strand at 621.539 kb on - strand at 621.539 kb on - strand at 621.630 kb on - strand at 621.669 kb on - strand at 621.673 kb on + strand at 621.673 kb on + strand at 621.673 kb on + strand at 621.674 kb on - strand at 621.674 kb on - strand at 621.682 kb on + strand at 621.795 kb on + strand at 621.826 kb on + strand at 622.153 kb on - strand, within SM_b20830 at 622.640 kb on - strand, within SM_b20830 at 622.640 kb on - strand, within SM_b20830 at 622.640 kb on - strand, within SM_b20830 at 622.774 kb on + strand, within SM_b20830 at 622.775 kb on - strand, within SM_b20830 at 622.903 kb on + strand at 622.903 kb on + strand at 622.903 kb on + strand at 622.904 kb on - strand at 622.904 kb on - strand at 622.906 kb on + strand at 622.906 kb on + strand at 622.907 kb on - strand at 622.907 kb on - strand at 622.909 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 620,910 + SM_b20829 0.57 +0.1 620,910 + SM_b20829 0.57 +0.1 620,910 + SM_b20829 0.57 +0.2 620,911 - SM_b20829 0.57 +0.7 620,911 - SM_b20829 0.57 -1.5 621,012 + SM_b20829 0.63 -0.1 621,012 + SM_b20829 0.63 +0.3 621,013 - SM_b20829 0.64 +0.4 621,013 - SM_b20829 0.64 +0.5 621,013 - SM_b20829 0.64 +3.5 621,013 - SM_b20829 0.64 -0.1 621,057 + SM_b20829 0.66 -0.5 621,058 - SM_b20829 0.66 +0.9 621,138 - SM_b20829 0.71 -0.9 621,264 - SM_b20829 0.78 -0.7 621,264 - SM_b20829 0.78 +0.4 621,264 - SM_b20829 0.78 +0.7 621,264 - SM_b20829 0.78 -0.2 621,375 - SM_b20829 0.85 +0.2 621,375 - SM_b20829 0.85 -0.4 621,379 + SM_b20829 0.85 -0.1 621,380 - SM_b20829 0.85 +0.4 621,422 - SM_b20829 0.88 +0.4 621,500 - +0.1 621,534 + +0.1 621,535 - -0.8 621,538 + +0.4 621,539 - -0.2 621,539 - -0.1 621,539 - +0.4 621,539 - +0.6 621,539 - +0.1 621,630 - -0.7 621,669 - -0.4 621,673 + -0.3 621,673 + -0.5 621,673 + -0.5 621,674 - -1.0 621,674 - -0.2 621,682 + -0.2 621,795 + -2.0 621,826 + -0.9 622,153 - SM_b20830 0.26 +0.1 622,640 - SM_b20830 0.74 -0.8 622,640 - SM_b20830 0.74 -0.2 622,640 - SM_b20830 0.74 +0.2 622,774 + SM_b20830 0.88 +0.4 622,775 - SM_b20830 0.88 -1.0 622,903 + +1.3 622,903 + -0.3 622,903 + -0.8 622,904 - +0.9 622,904 - +0.6 622,906 + -0.3 622,906 + +0.1 622,907 - -0.9 622,907 - +0.7 622,909 + -0.3
Or see this region's nucleotide sequence