Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20809

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20808 and SM_b20809 are separated by 236 nucleotidesSM_b20809 and SM_b20810 are separated by 112 nucleotides SM_b20807: SM_b20807 - hypothetical protein, at 591,882 to 593,519 _b20807 SM_b20808: SM_b20808 - hypothetical protein, at 593,495 to 594,271 _b20808 SM_b20809: SM_b20809 - arabinose-5-phosphate isomerase, at 594,508 to 595,497 _b20809 SM_b20810: SM_b20810 - membrane-located cell surface saccharide acetylase, at 595,610 to 597,643 _b20810 Position (kb) 594 595 596Strain fitness (log2 ratio) -2 -1 0 1 2at 593.703 kb on + strand, within SM_b20808at 593.704 kb on - strand, within SM_b20808at 593.772 kb on + strand, within SM_b20808at 593.819 kb on - strandat 593.895 kb on + strand, within SM_b20808at 593.895 kb on + strand, within SM_b20808at 593.929 kb on - strand, within SM_b20808at 593.941 kb on + strand, within SM_b20808at 593.950 kb on + strand, within SM_b20808at 593.950 kb on + strand, within SM_b20808at 593.960 kb on + strand, within SM_b20808at 593.960 kb on + strand, within SM_b20808at 593.979 kb on - strand, within SM_b20808at 593.979 kb on - strand, within SM_b20808at 593.979 kb on - strand, within SM_b20808at 593.979 kb on - strand, within SM_b20808at 593.982 kb on + strand, within SM_b20808at 593.982 kb on + strand, within SM_b20808at 593.982 kb on + strand, within SM_b20808at 593.982 kb on + strand, within SM_b20808at 593.983 kb on - strand, within SM_b20808at 593.983 kb on - strand, within SM_b20808at 593.983 kb on - strand, within SM_b20808at 593.983 kb on - strand, within SM_b20808at 593.983 kb on - strand, within SM_b20808at 594.160 kb on + strand, within SM_b20808at 594.273 kb on + strandat 594.274 kb on - strandat 594.274 kb on - strandat 594.274 kb on - strandat 594.288 kb on - strandat 594.338 kb on + strandat 594.372 kb on + strandat 594.473 kb on + strandat 594.515 kb on + strandat 594.516 kb on - strandat 594.521 kb on + strandat 594.522 kb on - strandat 594.522 kb on - strandat 594.533 kb on + strandat 594.534 kb on - strandat 594.552 kb on + strandat 594.553 kb on - strandat 594.624 kb on + strand, within SM_b20809at 594.751 kb on + strand, within SM_b20809at 594.751 kb on + strand, within SM_b20809at 594.816 kb on + strand, within SM_b20809at 594.816 kb on + strand, within SM_b20809at 594.817 kb on - strand, within SM_b20809at 594.860 kb on + strand, within SM_b20809at 594.861 kb on - strand, within SM_b20809at 594.861 kb on - strand, within SM_b20809at 594.868 kb on + strand, within SM_b20809at 594.918 kb on + strand, within SM_b20809at 594.989 kb on + strand, within SM_b20809at 595.043 kb on + strand, within SM_b20809at 595.044 kb on - strand, within SM_b20809at 595.360 kb on - strand, within SM_b20809at 595.562 kb on + strandat 595.563 kb on - strandat 595.574 kb on - strandat 595.630 kb on - strandat 595.835 kb on + strand, within SM_b20810at 595.835 kb on + strand, within SM_b20810at 595.836 kb on - strand, within SM_b20810at 595.950 kb on + strandat 595.950 kb on + strand, within SM_b20810at 595.950 kb on + strand, within SM_b20810at 595.951 kb on - strand, within SM_b20810at 595.951 kb on - strand, within SM_b20810at 595.951 kb on - strand, within SM_b20810at 595.951 kb on - strand, within SM_b20810at 595.951 kb on - strand, within SM_b20810at 596.041 kb on + strand, within SM_b20810at 596.041 kb on + strand, within SM_b20810at 596.042 kb on - strand, within SM_b20810at 596.042 kb on - strand, within SM_b20810at 596.119 kb on + strand, within SM_b20810at 596.119 kb on + strand, within SM_b20810at 596.119 kb on + strand, within SM_b20810at 596.119 kb on + strand, within SM_b20810at 596.120 kb on - strand, within SM_b20810at 596.120 kb on - strand, within SM_b20810at 596.210 kb on + strand, within SM_b20810at 596.210 kb on + strand, within SM_b20810at 596.210 kb on + strand, within SM_b20810at 596.210 kb on + strand, within SM_b20810at 596.211 kb on - strand, within SM_b20810at 596.211 kb on - strand, within SM_b20810at 596.211 kb on - strand, within SM_b20810at 596.211 kb on - strand, within SM_b20810at 596.211 kb on - strand, within SM_b20810at 596.279 kb on + strand, within SM_b20810at 596.280 kb on - strand, within SM_b20810at 596.379 kb on - strand, within SM_b20810at 596.452 kb on - strand, within SM_b20810at 596.459 kb on - strand, within SM_b20810at 596.492 kb on + strand, within SM_b20810at 596.492 kb on + strand, within SM_b20810

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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593,703 + SM_b20808 0.27 -1.2
593,704 - SM_b20808 0.27 -0.8
593,772 + SM_b20808 0.36 +0.3
593,819 - -0.2
593,895 + SM_b20808 0.51 +0.4
593,895 + SM_b20808 0.51 -0.0
593,929 - SM_b20808 0.56 -0.2
593,941 + SM_b20808 0.57 +1.4
593,950 + SM_b20808 0.59 +0.1
593,950 + SM_b20808 0.59 -0.7
593,960 + SM_b20808 0.60 +1.2
593,960 + SM_b20808 0.60 +0.1
593,979 - SM_b20808 0.62 +0.6
593,979 - SM_b20808 0.62 +0.9
593,979 - SM_b20808 0.62 -0.5
593,979 - SM_b20808 0.62 -1.0
593,982 + SM_b20808 0.63 +0.1
593,982 + SM_b20808 0.63 -0.1
593,982 + SM_b20808 0.63 -0.1
593,982 + SM_b20808 0.63 +0.9
593,983 - SM_b20808 0.63 +1.4
593,983 - SM_b20808 0.63 +0.2
593,983 - SM_b20808 0.63 +0.2
593,983 - SM_b20808 0.63 +0.0
593,983 - SM_b20808 0.63 +0.7
594,160 + SM_b20808 0.86 -0.7
594,273 + -0.6
594,274 - +1.8
594,274 - +0.9
594,274 - -1.0
594,288 - -1.2
594,338 + -0.2
594,372 + -1.3
594,473 + -1.9
594,515 + +1.3
594,516 - +1.9
594,521 + +0.4
594,522 - +1.3
594,522 - +0.5
594,533 + +0.9
594,534 - +0.5
594,552 + +0.7
594,553 - +0.4
594,624 + SM_b20809 0.12 +1.1
594,751 + SM_b20809 0.25 +0.4
594,751 + SM_b20809 0.25 +1.4
594,816 + SM_b20809 0.31 +1.4
594,816 + SM_b20809 0.31 +0.0
594,817 - SM_b20809 0.31 +1.4
594,860 + SM_b20809 0.36 +0.5
594,861 - SM_b20809 0.36 +0.8
594,861 - SM_b20809 0.36 +0.8
594,868 + SM_b20809 0.36 +0.6
594,918 + SM_b20809 0.41 +0.7
594,989 + SM_b20809 0.49 -0.7
595,043 + SM_b20809 0.54 +0.3
595,044 - SM_b20809 0.54 +0.5
595,360 - SM_b20809 0.86 +1.7
595,562 + +0.7
595,563 - -0.1
595,574 - -0.9
595,630 - -0.1
595,835 + SM_b20810 0.11 -0.9
595,835 + SM_b20810 0.11 +0.1
595,836 - SM_b20810 0.11 +0.7
595,950 + +0.8
595,950 + SM_b20810 0.17 +0.9
595,950 + SM_b20810 0.17 -0.3
595,951 - SM_b20810 0.17 +0.6
595,951 - SM_b20810 0.17 +0.4
595,951 - SM_b20810 0.17 +0.4
595,951 - SM_b20810 0.17 +0.6
595,951 - SM_b20810 0.17 -0.6
596,041 + SM_b20810 0.21 +1.1
596,041 + SM_b20810 0.21 -0.0
596,042 - SM_b20810 0.21 +1.2
596,042 - SM_b20810 0.21 +0.3
596,119 + SM_b20810 0.25 +0.2
596,119 + SM_b20810 0.25 +0.4
596,119 + SM_b20810 0.25 +0.6
596,119 + SM_b20810 0.25 +1.4
596,120 - SM_b20810 0.25 +0.3
596,120 - SM_b20810 0.25 +0.4
596,210 + SM_b20810 0.29 -0.2
596,210 + SM_b20810 0.29 +0.1
596,210 + SM_b20810 0.29 -1.0
596,210 + SM_b20810 0.29 -0.0
596,211 - SM_b20810 0.30 +0.3
596,211 - SM_b20810 0.30 +1.6
596,211 - SM_b20810 0.30 +1.1
596,211 - SM_b20810 0.30 -0.9
596,211 - SM_b20810 0.30 +0.2
596,279 + SM_b20810 0.33 +0.1
596,280 - SM_b20810 0.33 +0.8
596,379 - SM_b20810 0.38 +0.4
596,452 - SM_b20810 0.41 +0.2
596,459 - SM_b20810 0.42 +2.2
596,492 + SM_b20810 0.43 +0.3
596,492 + SM_b20810 0.43 +0.3

Or see this region's nucleotide sequence