Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20772 and SM_b20773 are separated by 197 nucleotides SM_b20773 and SM_b20774 are separated by 64 nucleotides SM_b20774 and SM_b20775 are separated by 130 nucleotides
SM_b20772: SM_b20772 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,564,614 to 1,565,660
_b20772
SM_b20773: SM_b20773 - GntR family transcriptional regulator, at 1,565,858 to 1,566,544
_b20773
SM_b20774: SM_b20774 - hypothetical protein, at 1,566,609 to 1,567,154
_b20774
SM_b20775: SM_b20775 - TonB-dependent receptor protein, at 1,567,285 to 1,570,887
_b20775
Position (kb)
1566
1567
1568 Strain fitness (log2 ratio)
-2
-1
0
1 at 1566.060 kb on - strand, within SM_b20773 at 1566.257 kb on + strand, within SM_b20773 at 1566.285 kb on - strand, within SM_b20773 at 1566.285 kb on - strand, within SM_b20773 at 1566.285 kb on - strand, within SM_b20773 at 1566.564 kb on - strand at 1566.591 kb on + strand at 1566.592 kb on - strand at 1566.632 kb on + strand at 1566.632 kb on + strand at 1566.632 kb on + strand at 1566.633 kb on - strand at 1566.633 kb on - strand at 1566.634 kb on + strand at 1566.635 kb on - strand at 1566.648 kb on + strand at 1567.005 kb on - strand, within SM_b20774 at 1567.032 kb on + strand, within SM_b20774 at 1567.078 kb on + strand, within SM_b20774 at 1567.541 kb on + strand at 1567.541 kb on + strand at 1567.541 kb on + strand at 1567.542 kb on - strand at 1567.542 kb on - strand at 1567.777 kb on + strand, within SM_b20775 at 1567.854 kb on + strand, within SM_b20775 at 1568.026 kb on + strand, within SM_b20775 at 1568.026 kb on + strand, within SM_b20775
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,566,060 - SM_b20773 0.29 -1.1 1,566,257 + SM_b20773 0.58 +0.2 1,566,285 - SM_b20773 0.62 -0.6 1,566,285 - SM_b20773 0.62 +0.2 1,566,285 - SM_b20773 0.62 +1.4 1,566,564 - +0.5 1,566,591 + +0.3 1,566,592 - -1.1 1,566,632 + +0.6 1,566,632 + -0.6 1,566,632 + -1.4 1,566,633 - -0.5 1,566,633 - +0.4 1,566,634 + -0.1 1,566,635 - +0.1 1,566,648 + -0.9 1,567,005 - SM_b20774 0.73 -0.2 1,567,032 + SM_b20774 0.77 -1.6 1,567,078 + SM_b20774 0.86 -0.4 1,567,541 + -0.4 1,567,541 + -0.7 1,567,541 + -0.0 1,567,542 - -1.5 1,567,542 - -0.6 1,567,777 + SM_b20775 0.14 +0.4 1,567,854 + SM_b20775 0.16 -0.3 1,568,026 + SM_b20775 0.21 -0.3 1,568,026 + SM_b20775 0.21 -2.4
Or see this region's nucleotide sequence