Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20772

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20771 and SM_b20772 are separated by 75 nucleotidesSM_b20772 and SM_b20773 are separated by 197 nucleotidesSM_b20773 and SM_b20774 are separated by 64 nucleotides SM_b20771: SM_b20771 - hypothetical protein, at 1,563,552 to 1,564,538 _b20771 SM_b20772: SM_b20772 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,564,614 to 1,565,660 _b20772 SM_b20773: SM_b20773 - GntR family transcriptional regulator, at 1,565,858 to 1,566,544 _b20773 SM_b20774: SM_b20774 - hypothetical protein, at 1,566,609 to 1,567,154 _b20774 Position (kb) 1564 1565 1566Strain fitness (log2 ratio) -2 -1 0 1at 1563.721 kb on + strand, within SM_b20771at 1563.721 kb on + strand, within SM_b20771at 1564.009 kb on + strand, within SM_b20771at 1564.009 kb on + strand, within SM_b20771at 1564.009 kb on + strand, within SM_b20771at 1564.009 kb on + strand, within SM_b20771at 1564.009 kb on + strand, within SM_b20771at 1564.010 kb on - strand, within SM_b20771at 1564.010 kb on - strand, within SM_b20771at 1564.010 kb on - strand, within SM_b20771at 1564.010 kb on - strand, within SM_b20771at 1564.010 kb on - strand, within SM_b20771at 1564.010 kb on - strand, within SM_b20771at 1564.010 kb on - strand, within SM_b20771at 1564.215 kb on - strand, within SM_b20771at 1564.215 kb on - strand, within SM_b20771at 1564.216 kb on + strand, within SM_b20771at 1564.246 kb on + strand, within SM_b20771at 1564.247 kb on - strand, within SM_b20771at 1564.303 kb on + strand, within SM_b20771at 1564.409 kb on + strand, within SM_b20771at 1564.409 kb on + strand, within SM_b20771at 1564.690 kb on - strandat 1564.690 kb on - strandat 1564.690 kb on - strandat 1564.720 kb on + strand, within SM_b20772at 1564.828 kb on + strandat 1564.828 kb on + strand, within SM_b20772at 1564.828 kb on + strand, within SM_b20772at 1564.828 kb on + strand, within SM_b20772at 1564.828 kb on + strand, within SM_b20772at 1564.828 kb on + strand, within SM_b20772at 1564.829 kb on - strand, within SM_b20772at 1564.829 kb on - strand, within SM_b20772at 1564.829 kb on - strand, within SM_b20772at 1564.907 kb on + strand, within SM_b20772at 1565.233 kb on + strand, within SM_b20772at 1566.060 kb on - strand, within SM_b20773at 1566.257 kb on + strand, within SM_b20773at 1566.285 kb on - strand, within SM_b20773at 1566.285 kb on - strand, within SM_b20773at 1566.285 kb on - strand, within SM_b20773at 1566.564 kb on - strandat 1566.591 kb on + strandat 1566.592 kb on - strandat 1566.632 kb on + strandat 1566.632 kb on + strandat 1566.632 kb on + strandat 1566.633 kb on - strandat 1566.633 kb on - strandat 1566.634 kb on + strandat 1566.635 kb on - strandat 1566.648 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,563,721 + SM_b20771 0.17 +0.2
1,563,721 + SM_b20771 0.17 -0.1
1,564,009 + SM_b20771 0.46 +1.2
1,564,009 + SM_b20771 0.46 -1.8
1,564,009 + SM_b20771 0.46 +0.2
1,564,009 + SM_b20771 0.46 -0.4
1,564,009 + SM_b20771 0.46 -0.2
1,564,010 - SM_b20771 0.46 -0.2
1,564,010 - SM_b20771 0.46 +0.1
1,564,010 - SM_b20771 0.46 -0.6
1,564,010 - SM_b20771 0.46 +0.3
1,564,010 - SM_b20771 0.46 +0.3
1,564,010 - SM_b20771 0.46 -1.4
1,564,010 - SM_b20771 0.46 -0.3
1,564,215 - SM_b20771 0.67 -1.1
1,564,215 - SM_b20771 0.67 +0.1
1,564,216 + SM_b20771 0.67 -0.2
1,564,246 + SM_b20771 0.70 -0.0
1,564,247 - SM_b20771 0.70 +0.9
1,564,303 + SM_b20771 0.76 +0.2
1,564,409 + SM_b20771 0.87 -0.2
1,564,409 + SM_b20771 0.87 -0.6
1,564,690 - -0.7
1,564,690 - -0.5
1,564,690 - +0.1
1,564,720 + SM_b20772 0.10 +0.0
1,564,828 + +0.2
1,564,828 + SM_b20772 0.20 +0.2
1,564,828 + SM_b20772 0.20 +0.0
1,564,828 + SM_b20772 0.20 -0.6
1,564,828 + SM_b20772 0.20 -0.2
1,564,828 + SM_b20772 0.20 -0.4
1,564,829 - SM_b20772 0.21 -0.2
1,564,829 - SM_b20772 0.21 -0.5
1,564,829 - SM_b20772 0.21 +0.4
1,564,907 + SM_b20772 0.28 -1.1
1,565,233 + SM_b20772 0.59 -0.9
1,566,060 - SM_b20773 0.29 -1.1
1,566,257 + SM_b20773 0.58 +0.2
1,566,285 - SM_b20773 0.62 -0.6
1,566,285 - SM_b20773 0.62 +0.2
1,566,285 - SM_b20773 0.62 +1.4
1,566,564 - +0.5
1,566,591 + +0.3
1,566,592 - -1.1
1,566,632 + +0.6
1,566,632 + -0.6
1,566,632 + -1.4
1,566,633 - -0.5
1,566,633 - +0.4
1,566,634 + -0.1
1,566,635 - +0.1
1,566,648 + -0.9

Or see this region's nucleotide sequence