Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20769

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20768 and SM_b20769 are separated by 53 nucleotidesSM_b20769 and SM_b20770 are separated by 34 nucleotidesSM_b20770 and SM_b20771 are separated by 105 nucleotides SM_b20768: SM_b20768 - hypothetical protein, at 1,560,378 to 1,561,319 _b20768 SM_b20769: SM_b20769 - hypothetical protein, at 1,561,373 to 1,562,911 _b20769 SM_b20770: SM_b20770 - hypothetical protein, at 1,562,946 to 1,563,446 _b20770 SM_b20771: SM_b20771 - hypothetical protein, at 1,563,552 to 1,564,538 _b20771 Position (kb) 1561 1562 1563Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1560.404 kb on + strandat 1560.405 kb on - strandat 1560.405 kb on - strandat 1560.415 kb on + strandat 1560.416 kb on - strandat 1560.458 kb on - strandat 1560.595 kb on + strand, within SM_b20768at 1560.595 kb on + strand, within SM_b20768at 1560.613 kb on + strand, within SM_b20768at 1560.613 kb on + strand, within SM_b20768at 1560.614 kb on - strand, within SM_b20768at 1560.766 kb on + strand, within SM_b20768at 1560.766 kb on + strand, within SM_b20768at 1560.767 kb on - strand, within SM_b20768at 1560.767 kb on - strand, within SM_b20768at 1560.778 kb on + strand, within SM_b20768at 1560.778 kb on + strand, within SM_b20768at 1560.779 kb on - strand, within SM_b20768at 1560.779 kb on - strand, within SM_b20768at 1561.003 kb on + strand, within SM_b20768at 1561.035 kb on + strand, within SM_b20768at 1561.035 kb on + strand, within SM_b20768at 1561.035 kb on + strand, within SM_b20768at 1561.036 kb on - strand, within SM_b20768at 1561.036 kb on - strand, within SM_b20768at 1561.261 kb on + strandat 1561.348 kb on + strandat 1561.639 kb on - strand, within SM_b20769at 1561.639 kb on - strand, within SM_b20769at 1561.698 kb on + strand, within SM_b20769at 1561.770 kb on + strand, within SM_b20769at 1561.770 kb on + strand, within SM_b20769at 1561.821 kb on + strand, within SM_b20769at 1561.821 kb on + strand, within SM_b20769at 1561.821 kb on + strand, within SM_b20769at 1561.821 kb on + strand, within SM_b20769at 1562.161 kb on - strand, within SM_b20769at 1562.460 kb on + strand, within SM_b20769at 1562.461 kb on - strand, within SM_b20769at 1562.461 kb on - strand, within SM_b20769at 1562.709 kb on + strand, within SM_b20769at 1562.710 kb on - strand, within SM_b20769at 1562.902 kb on + strandat 1563.070 kb on + strand, within SM_b20770at 1563.070 kb on + strand, within SM_b20770at 1563.104 kb on - strand, within SM_b20770at 1563.289 kb on + strand, within SM_b20770at 1563.289 kb on + strand, within SM_b20770at 1563.289 kb on + strand, within SM_b20770at 1563.289 kb on + strand, within SM_b20770at 1563.289 kb on + strand, within SM_b20770at 1563.289 kb on + strand, within SM_b20770at 1563.290 kb on - strand, within SM_b20770at 1563.320 kb on + strand, within SM_b20770at 1563.320 kb on + strand, within SM_b20770at 1563.320 kb on + strand, within SM_b20770at 1563.321 kb on - strand, within SM_b20770at 1563.321 kb on - strand, within SM_b20770at 1563.356 kb on - strand, within SM_b20770at 1563.356 kb on - strand, within SM_b20770at 1563.553 kb on + strandat 1563.554 kb on - strandat 1563.554 kb on - strandat 1563.721 kb on + strand, within SM_b20771at 1563.721 kb on + strand, within SM_b20771

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,560,404 + -1.4
1,560,405 - +0.3
1,560,405 - +0.0
1,560,415 + -0.2
1,560,416 - -0.8
1,560,458 - -0.1
1,560,595 + SM_b20768 0.23 -0.0
1,560,595 + SM_b20768 0.23 -0.4
1,560,613 + SM_b20768 0.25 -0.2
1,560,613 + SM_b20768 0.25 +0.6
1,560,614 - SM_b20768 0.25 -0.4
1,560,766 + SM_b20768 0.41 -0.6
1,560,766 + SM_b20768 0.41 +0.1
1,560,767 - SM_b20768 0.41 -0.9
1,560,767 - SM_b20768 0.41 -0.7
1,560,778 + SM_b20768 0.42 +0.8
1,560,778 + SM_b20768 0.42 +0.2
1,560,779 - SM_b20768 0.43 -0.4
1,560,779 - SM_b20768 0.43 +0.1
1,561,003 + SM_b20768 0.66 +0.6
1,561,035 + SM_b20768 0.70 -0.6
1,561,035 + SM_b20768 0.70 -0.8
1,561,035 + SM_b20768 0.70 +0.6
1,561,036 - SM_b20768 0.70 +0.1
1,561,036 - SM_b20768 0.70 -0.1
1,561,261 + +1.0
1,561,348 + -0.6
1,561,639 - SM_b20769 0.17 -0.5
1,561,639 - SM_b20769 0.17 -0.5
1,561,698 + SM_b20769 0.21 -0.4
1,561,770 + SM_b20769 0.26 -0.2
1,561,770 + SM_b20769 0.26 -0.3
1,561,821 + SM_b20769 0.29 -0.3
1,561,821 + SM_b20769 0.29 +0.7
1,561,821 + SM_b20769 0.29 +0.1
1,561,821 + SM_b20769 0.29 -1.3
1,562,161 - SM_b20769 0.51 -1.3
1,562,460 + SM_b20769 0.71 -1.8
1,562,461 - SM_b20769 0.71 -0.9
1,562,461 - SM_b20769 0.71 -0.2
1,562,709 + SM_b20769 0.87 -0.2
1,562,710 - SM_b20769 0.87 -0.4
1,562,902 + -0.5
1,563,070 + SM_b20770 0.25 +0.7
1,563,070 + SM_b20770 0.25 -0.3
1,563,104 - SM_b20770 0.32 -1.6
1,563,289 + SM_b20770 0.68 -0.7
1,563,289 + SM_b20770 0.68 -0.1
1,563,289 + SM_b20770 0.68 +0.2
1,563,289 + SM_b20770 0.68 +0.4
1,563,289 + SM_b20770 0.68 -0.4
1,563,289 + SM_b20770 0.68 +0.3
1,563,290 - SM_b20770 0.69 -0.1
1,563,320 + SM_b20770 0.75 +1.9
1,563,320 + SM_b20770 0.75 -0.6
1,563,320 + SM_b20770 0.75 -0.5
1,563,321 - SM_b20770 0.75 +0.7
1,563,321 - SM_b20770 0.75 -0.6
1,563,356 - SM_b20770 0.82 +0.4
1,563,356 - SM_b20770 0.82 -0.2
1,563,553 + +1.8
1,563,554 - +2.8
1,563,554 - -0.3
1,563,721 + SM_b20771 0.17 +0.2
1,563,721 + SM_b20771 0.17 -0.1

Or see this region's nucleotide sequence